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[178021_at]

Description F02H6.6 /REP_DB=WormBase Gene ID /WP=CE17630 /TR=O62134 /GB=CAB05174.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 27.8
(-0.7)
A 		66
(3)
A 		3.8
(-3)
A 		39.1
(0.4)
A 		62
B 30.2
(2.6)
A 		27.4
(1.8)
A 		31.7
(3)
A 		10.3
(-3)
A 		21
C 24.6
(-3)
A 		38.1
(0.7)
A 		29.7
(-1.6)
A 		46.3
(3)
A 		22
avr 27.5
(-1.4) 		43.8
(3) 		21.7
(-3) 		31.9
(-0.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9
(-3)
A 		11.1
(-2.5)
A 		33.5
(3)
A 		22.3
(0.3)
A 		28.2
(1.7)
A 		26.9
(1.4)
A 		25
B 21.3
(0.7)
A 		32
(2.9)
A 		10.7
(-1.5)
A 		32.4
(3)
A 		3.2
(-3)
A 		10
(-1.6)
A 		29
C 20.2
(0.7)
A 		31.1
(3)
A 		30
(2.8)
A 		20.5
(0.7)
A 		4.3
(-2.7)
A 		2.9
(-3)
A 		28
avr 16.8
(-0.8) 		24.7
(2.8) 		24.7
(2.8) 		25.1
(3) 		11.9
(-3) 		13.3
(-2.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.1
(1.1)
A 		14.3
(3)
A 		1
(-3)
A 		5.7
(-0.9)
A 		13
B 9.6
(3)
A 		6.8
(0.7)
A 		7.3
(1.1)
A 		2.2
(-3)
A 		7
C 8.1
(-2.4)
A 		11
(3)
A 		10.3
(1.7)
A 		7.8
(-3)
A 		3
avr 9.3
(1.5) 		10.7
(3) 		6.2
(-1.9) 		5.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.7
(-3)
A 		4
(-1)
A 		7.3
(1.9)
A 		5.7
(0.5)
A 		8.5
(3)
A 		6.6
(1.3)
A 		7
B 7.4
(0.9)
A 		10.6
(3)
A 		2.6
(-2.2)
A 		8.6
(1.7)
A 		1.3
(-3)
A 		3.7
(-1.5)
A 		9
C 7.5
(1.6)
A 		9.5
(3)
A 		7.6
(1.7)
A 		4.1
(-0.8)
A 		1.4
(-2.7)
A 		1
(-3)
A 		9
avr 5.5
(-0.5) 		8
(3) 		5.8
(-0.1) 		6.1
(0.3) 		3.7
(-3) 		3.8
(-2.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9532
Sequence Type Exemplar sequence
Representative Public ID F02H6.6 NCBI
Target Description F02H6.6 /REP_DB=WormBase Gene ID /WP=CE17630 /TR=O62134 /GB=CAB05174.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070330 NCBI Caenorhabditis elegans F02H6.6 (F02H6.6) mRNA, complete cds. 11/11 None
SNAP00000026628 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14229305:14230322:-1 11/11 None
GENEFINDER00000026630 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14225887:14230322:-1 11/11 None
F02H6.6 ENSEMBL cdna:known chromosome:CEL140:IV:14229305:14230868:-1 gene:F02H6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14229310-14230874(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02H6.6
Entrez Gene 184104 Entrez gene
SwissProt O62134 EMBL-EBI
WormBase CE17630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05175 Hypothetical protein F02H6.7 [Caenorhabditis elegans] ref|NP_502730.1| F02H6.7 [Caenorhabditis elegans] 0.0
blast CAB05174 Hypothetical protein F02H6.6 [Caenorhabditis elegans] ref|NP_502731.1| F02H6.6 [Caenorhabditis elegans] 1.0E-165
blast CAB05174 Hypothetical protein F02H6.6 [Caenorhabditis elegans] ref|NP_502731.1| F02H6.6 [Caenorhabditis elegans] 1.0E-130
blast CAB05174 Hypothetical protein F02H6.6 [Caenorhabditis elegans] ref|NP_502731.1| F02H6.6 [Caenorhabditis elegans] 1.0E-123
blast CAB57909 Hypothetical protein Y64G10A.1 [Caenorhabditis elegans] ref|NP_502732.1| Y64G10A.1 [Caenorhabditis elegans] 1.0E-104
blast CAB05175 Hypothetical protein F02H6.7 [Caenorhabditis elegans] ref|NP_502730.1| F02H6.7 [Caenorhabditis elegans] 1.0E-103
blast CAB57909 Hypothetical protein Y64G10A.1 [Caenorhabditis elegans] ref|NP_502732.1| Y64G10A.1 [Caenorhabditis elegans] 1.0E-92
Sequence
Target Sequence 
>C. ELEGANS:178021_AT
ggtgctccatgttgtattggtactccaaaaattgtcaataactggtatcactgtgcaagt
acatcacaaactactccaactgcaccatgctgtccaactggaggagtatggagtgattgg
agttcatgggttcagaatgggaatttgacagagtacactcgtactcgaaattgtctttct
ggaggattcagttgtgcttgtgttggtgaaagtgaagaaacgaagtttgaatgtccatgt
acaccaatgaggacaatctatgcagggagcactgcgtgtgctcatctaacaagtaaactt
attcataatgtgcgtgagccgtacatggacaaagccttgtgtcgaacatattatgccatg
gaagctactgattttcgaaatgatttcgctttctatagtgcaaaatacaatgcaactatg
tctactgcggcgtggcttgataaggctggaagatgtacaattggaaattttccaggatcg
tatacaaacacaaatggagcatattggcggttgggattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCTCCATGTTGTATTGGTACTC 235 501 274 Antisense
TGCACCATGCTGTCCAACTGGAGGA 102 579 354 Antisense
GTACACTCGTACTCGAAATTGTCTT 52 459 426 Antisense
GGAGGATTCAGTTGTGCTTGTGTTG 117 517 454 Antisense
GAAGTTTGAATGTCCATGTACACCA 346 337 495 Antisense
GCACTGCGTGTGCTCATCTAACAAG 43 317 542 Antisense
GTGCGTGAGCCGTACATGGACAAAG 322 477 583 Antisense
ATGATTTCGCTTTCTATAGTGCAAA 10 47 653 Antisense
AATGCAACTATGTCTACTGCGGCGT 705 165 682 Antisense
ACTGCGGCGTGGCTTGATAAGGCTG 107 99 697 Antisense
GGAGCATATTGGCGGTTGGGATTTA 260 521 769 Antisense
Sequence Source Affymetrix Proprietary Database