[Home] | [Total List]

[178020_at]

Description E03H4.2 /REP_DB=WormBase Gene ID /WP=CE09129 /TR=O17743 /GB=CAB04025.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.9
(-3)
A 		2.8
(-0.7)
A 		2.8
(-0.7)
A 		4.2
(3)
A 		2
B 1.7
(-3)
A 		2.8
(2.1)
A 		2.2
(-0.7)
A 		3
(3)
A 		1
C 2.8
(-2)
A 		1.8
(-3)
A 		2.4
(-2.4)
A 		8
(3)
A 		6
avr 2.1
(-3) 		2.5
(-2.2) 		2.5
(-2.2) 		5.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 3
(3)
A 		1.6
(-3)
A 		2.4
(0.4)
A 		1.7
(-2.6)
A 		2
(-1.3)
A 		2.3
(-0)
A 		1
B 1.4
(-1.2)
A 		1.9
(0.3)
A 		2.8
(3)
A 		1.7
(-0.3)
A 		1.3
(-1.5)
A 		0.8
(-3)
A 		2
C 1.6
(-2.2)
A 		2.9
(3)
A 		2.2
(0.2)
A 		2.2
(0.2)
A 		1.4
(-3)
A 		1.6
(-2.2)
A 		2
avr 2
(-0.3) 		2.1
(0.3) 		2.5
(3) 		1.9
(-1) 		1.6
(-3) 		1.6
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(3)
A 		0.6
(-3)
A 		0.7
(3)
A 		0.6
(-3)
A 		0
B 0.5
(-3)
A 		0.7
(3)
A 		0.5
(-3)
A 		0.6
(0)
A 		0
C 0.9
(0)
A 		0.5
(-3)
A 		0.8
(-0.8)
A 		1.3
(3)
A 		1
avr 0.7
(-0) 		0.6
(-3) 		0.7
(-0) 		0.8
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(0)
A 		0.6
(3)
A 		0.5
(0)
A 		0.4
(-3)
A 		0.6
(3)
A 		0.6
(3)
A 		0
B 0.5
(0)
A 		0.6
(1.5)
A 		0.7
(3)
A 		0.5
(0)
A 		0.5
(0)
A 		0.3
(-3)
A 		0
C 0.6
(-0.6)
A 		0.9
(3)
A 		0.6
(-0.6)
A 		0.4
(-3)
A 		0.5
(-1.8)
A 		0.5
(-1.8)
A 		1
avr 0.5
(-1) 		0.7
(3) 		0.6
(1) 		0.4
(-3) 		0.5
(-1) 		0.5
(-1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2274
Sequence Type Exemplar sequence
Representative Public ID E03H4.2 NCBI
Target Description E03H4.2 /REP_DB=WormBase Gene ID /WP=CE09129 /TR=O17743 /GB=CAB04025.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060744 NCBI Caenorhabditis elegans E03H4.2 (E03H4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000031058 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12409692:12412610:-1 11/11 None
SNAP00000031035 ENSEMBL cdna:SNAP chromosome:CEL140:I:12411265:12412577:-1 11/11 None
E03H4.2 ENSEMBL cdna:known chromosome:CEL140:I:12411265:12412610:-1 gene:E03H4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12411195-12412541(-) 92.08 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H4.2
Entrez Gene 184017 Entrez gene
SwissProt O17743 EMBL-EBI
WormBase CE36122 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04025 Hypothetical protein E03H4.2 [Caenorhabditis elegans] ref|NP_493145.2| E03H4.2 [Caenorhabditis elegans] 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast CAA18370 Hypothetical protein ZK1025.3 [Caenorhabditis elegans] ref|NP_492928.1| ZK1025.3 [Caenorhabditis elegans] 1.0E-138
blast CAA18370 Hypothetical protein ZK1025.3 [Caenorhabditis elegans] ref|NP_492928.1| ZK1025.3 [Caenorhabditis elegans] 1.0E-135
blast CAA99877 Hypothetical protein K01D12.3 [Caenorhabditis elegans] ref|NP_506101.1| K01D12.3 [Caenorhabditis elegans] 3.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.5E-55
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.5E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493145.2 1 13-35
E03H4.2 1 13-35
GENEFINDER00000031058 1 13-35
SNAP00000031035 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:178020_AT
taagtatgttgcacttcctcgaaaccaaactcaacttctcacaatggtcacgttgggcat
cggacatgacgttacgggagagataggcttgaaagaacttcaccctaacatggaattcta
cggagccgatccaactgccgacgtgaacaaaattttgtatgaggataagcttggaggaaa
gtactatcgatacgctgttagtggagtgaatggagtgcagaaatcgagtatttataaaga
gtacgataactataaaacagaggccactgagcacatagcagtggactatttcttcaaata
catccttaataaaagcctcattgacattttgtggattgatattgaacaaaatgagtttcc
aattatggagcagcttcatgtaaataaagaaattgacaatgcaggtgtcacaatatgtca
gatgaatctcgaagttcataaaggattattcgagcaaccagttgaggaaacaaagttgtt
ccatgatttcgtgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGTATGTTGCACTTCCTCGAAAC 375 637 603 Antisense
TCGAAACCAAACTCAACTTCTCACA 560 599 621 Antisense
ATGGTCACGTTGGGCATCGGACATG 433 51 646 Antisense
GGCATCGGACATGACGTTACGGGAG 351 537 658 Antisense
GAACTTCACCCTAACATGGAATTCT 25 351 697 Antisense
GGAATTCTACGGAGCCGATCCAACT 138 533 714 Antisense
CGATCCAACTGCCGACGTGAACAAA 361 249 729 Antisense
ACAGAGGCCACTGAGCACATAGCAG 694 105 859 Antisense
AAAGCCTCATTGACATTTTGTGGAT 361 125 914 Antisense
AAAGGATTATTCGAGCAACCAGTTG 61 121 1042 Antisense
CAAAGTTGTTCCATGATTTCGTGTG 107 187 1073 Antisense
Sequence Source Affymetrix Proprietary Database