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[178019_s_at]

Description M04B2.4 /REP_DB=WormBase Gene ID /WP=CE12390 /TR=Q21504 /GB=CAB01237.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 42      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 62      6grp_total > 30      4grp_total > 51      6grp_highest_sub > 04      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 463.6
(-1.3)
P 		1056.4
(3)
P 		727.1
(0.6)
P 		234.9
(-3)
P 		822
B 542.3
(0.7)
P 		741.3
(3)
P 		543
(0.8)
P 		212.5
(-3)
P 		529
C 493.6
(0.4)
P 		667.9
(2.7)
P 		690.7
(3)
P 		232.7
(-3)
P 		458
avr 499.8
(-0.2) 		821.9
(3) 		653.6
(1.3) 		226.7
(-3) 		595

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 566
1 2 3 4 5 6 range
A 491.5
(0.3)
P 		633.5
(3)
P 		457.2
(-0.3)
P 		611.5
(2.6)
P 		599.8
(2.4)
P 		312
(-3)
P 		322
B 424.7
(-2.3)
P 		510.6
(-0.7)
P 		699.5
(3)
P 		619.1
(1.4)
P 		395.3
(-2.9)
P 		389.8
(-3)
P 		310
C 431.1
(-1.3)
P 		840.8
(3)
P 		644.5
(0.9)
P 		657.1
(1.1)
P 		307.5
(-2.7)
P 		275.3
(-3)
P 		566
avr 449.1
(-0.8) 		661.6
(3) 		600.4
(1.9) 		629.2
(2.4) 		434.2
(-1.1) 		325.7
(-3) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 168.8
(1.1)
P 		229.3
(3)
P 		190.1
(1.8)
P 		34.4
(-3)
P 		195
B 172.9
(2.6)
P 		183.1
(3)
P 		125.8
(0.5)
P 		45.3
(-3)
P 		138
C 163.4
(0.7)
P 		192
(1.5)
P 		240.7
(3)
P 		39.2
(-3)
P 		202
avr 168.4
(1.8) 		201.5
(3) 		185.5
(2.4) 		39.6
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 90.6
(-2.4)
P 		225.3
(3)
P 		99.6
(-2.1)
P 		155.1
(0.2)
P 		181
(1.2)
P 		76
(-3)
P 		149
B 147.8
(-2.4)
P 		169.9
(3)
P 		169.9
(3)
P 		164
(1.6)
P 		160.6
(0.7)
P 		145.3
(-3)
P 		25
C 159.8
(-0.5)
P 		256.5
(3)
P 		164
(-0.4)
P 		132.1
(-1.5)
P 		99.5
(-2.7)
P 		92.2
(-3)
P 		164
avr 132.7
(-1.5) 		217.2
(3) 		144.5
(-0.9) 		150.4
(-0.6) 		147
(-0.7) 		104.5
(-3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178019_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8365
Sequence Type Exemplar sequence
Representative Public ID M04B2.4 NCBI
Target Description M04B2.4 /REP_DB=WormBase Gene ID /WP=CE12390 /TR=Q21504 /GB=CAB01237.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069770 NCBI Caenorhabditis elegans M04B2.4 (M04B2.4) mRNA, complete cds. 11/11 None
SNAP00000026178 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11517921:11521001:-1 11/11 None
GENEFINDER00000026184 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11518558:11521001:-1 11/11 None
M04B2.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:11518400:11521001:-1 gene:M04B2.4 11/11 None
M04B2.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:11518558:11521008:-1 gene:M04B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11518563-11521007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M04B2.4
Entrez Gene 178073 Entrez gene
SwissProt Q21504 EMBL-EBI
WormBase CE12390 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1598898_S_AT similar to CG3270-PA cfa
CANINE:1598897_AT similar to CG3270-PA cfa
CANINE:1596436_AT similar to CG3270-PA cfa
CANINE:1592040_AT similar to CG3270-PA cfa
CANINE_2:CFA.13414.1.S1_AT similar to CG3270-PA cfa
CANINE_2:CFA.14336.1.A1_S_AT similar to CG3270-PA cfa
CANINE_2:CFAAFFX.16343.1.S1_AT similar to CG3270-PA cfa
CANINE_2:CFAAFFX.16343.1.S1_S_AT similar to CG3270-PA cfa
DROSOPHILA_2:1639905_AT lethal (2) 37Bb dm
DROSGENOME1:146472_AT lethal (2) 37Bb dm
HG-U133_PLUS_2:223128_AT hypothetical protein H17 hs
HG-U133B:223128_AT hypothetical protein H17 hs
HU35KSUBA:RC_AA609168_AT hypothetical protein H17 hs
U133_X3P:G12053340_3P_AT hypothetical protein H17 hs
HG-U95C:65456_AT hypothetical protein H17 hs
MG-U74AV2:103879_AT cDNA sequence BC024806 mm
MOE430A:1451354_AT cDNA sequence BC024806 mm
MOUSE430A_2:1451354_AT cDNA sequence BC024806 mm
MOUSE430_2:1451354_AT cDNA sequence BC024806 mm
MU19KSUBC:TC35629_AT CDNA sequence BC024806, mRNA (cDNA clone MGC:38853 IMAGE:5361053) mm
RAE230A:1376921_AT hypothetical LOC315547 (predicted) rn
RAT230_2:1376921_AT hypothetical LOC315547 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01237 Hypothetical protein M04B2.4 [Caenorhabditis elegans] ref|NP_502171.1| M04B2.4 [Caenorhabditis elegans] 0.0
blast CAE62106 Hypothetical protein CBG06141 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178019_S_AT
gctgcagggccatgggctggacaagtggcgaaaatggctggaattggcaagggcactggt
cttctggcagttcctgttccgattcaaccacgaaaacgtgatgttttcgttatatttgcc
ccagatgtaccttcagatcttcccttcattatcgatccatccactggtgtattctgtcgt
caaacagatagtggacaaacatttttagtcggaagaacaccttcaaaagaagaagatgcc
aagcgagatcatagtaatttggatgtcgactatgatgacttttatcaaaagatttggcct
gttttagtggatcgtgtacctggatttcaaactgcaaaggtcaaaagtgcatggagcggt
tatcaggacatcaacacttttgatgatgctccagtgattggagagcatcctctctacaca
aatcttcacatgatgtgcggatttggagaaagaggcgtaatgcactcaatggctgccgct
cgtgcttacgcagaacgaatcttcgacggtgcctacatcaacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCAGGGCCATGGGCTGGACAAG 22 297 1003 Antisense
GAATTGGCAAGGGCACTGGTCTTCT 235 323 1043 Antisense
TTCCTGTTCCGATTCAACCACGAAA 166 695 1073 Antisense
GTGATGTTTTCGTTATATTTGCCCC 627 483 1100 Antisense
TATATTTGCCCCAGATGTACCTTCA 30 661 1113 Antisense
AGATCTTCCCTTCATTATCGATCCA 698 63 1137 Antisense
GATCCATCCACTGGTGTATTCTGTC 64 417 1156 Antisense
AGTGGATCGTGTACCTGGATTTCAA 400 59 1308 Antisense
AGAGCATCCTCTCTACACAAATCTT 611 69 1404 Antisense
CGTAATGCACTCAATGGCTGCCGCT 233 247 1458 Antisense
TCTTCGACGGTGCCTACATCAACGT 499 617 1502 Antisense
Sequence Source Affymetrix Proprietary Database