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[178018_at]

Description T23D8.7 /REP_DB=WormBase Gene ID /WP=CE14058 /TR=Q9XVI3 /GB=CAB03400.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 95.8
(-3)
A 		138.5
(1.5)
M 		152.6
(3)
M 		150.5
(2.8)
A 		57
B 115.3
(-1.1)
A 		176.5
(3)
A 		112.1
(-1.3)
A 		86.8
(-3)
A 		90
C 87.9
(-3)
A 		128.6
(0.3)
A 		124.5
(-0)
P 		161.3
(3)
P 		73
avr 99.7
(-3) 		147.9
(3) 		129.7
(0.7) 		132.9
(1.1) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 119.2
(-1.8)
A 		108.8
(-2)
M 		57.5
(-3)
P 		115.4
(-1.9)
P 		250.8
(0.7)
P 		370.8
(3)
P 		313
B 77.8
(-3)
M 		114.9
(-2.2)
A 		77.1
(-3)
A 		122.2
(-2.1)
M 		210.5
(-0.2)
P 		362.5
(3)
P 		285
C 84.5
(-3)
A 		83.7
(-3)
A 		173.6
(-1.1)
P 		166.4
(-1.2)
P 		255.6
(0.7)
P 		364.3
(3)
P 		281
avr 93.8
(-3) 		102.5
(-2.8) 		102.7
(-2.8) 		134.7
(-2.1) 		239
(0.2) 		365.9
(3) 		272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 34.9
(1.3)
A 		30.1
(-0.3)
M 		39.9
(3)
M 		22
(-3)
A 		18
B 36.8
(1.4)
A 		43.6
(3)
A 		26
(-1.2)
A 		18.5
(-3)
A 		25
C 29.1
(-2.3)
A 		37
(0.6)
A 		43.4
(3)
P 		27.2
(-3)
P 		16
avr 33.6
(1.6) 		36.9
(3) 		36.4
(2.8) 		22.6
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 22
(-2.3)
A 		38.7
(-1)
M 		12.5
(-3)
P 		29.3
(-1.7)
P 		75.7
(1.9)
P 		90.3
(3)
P 		78
B 27.1
(-2.6)
M 		38.2
(-2)
A 		18.7
(-3)
A 		32.4
(-2.3)
M 		85.5
(0.4)
P 		135.2
(3)
P 		117
C 31.3
(-2.6)
A 		25.5
(-3)
A 		44.2
(-1.8)
P 		33.5
(-2.5)
P 		82.7
(0.6)
P 		122
(3)
P 		97
avr 26.8
(-2.9) 		34.1
(-2.4) 		25.1
(-3) 		31.7
(-2.6) 		81.3
(0.7) 		115.8
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1803
Sequence Type Exemplar sequence
Representative Public ID T23D8.7 NCBI
Target Description T23D8.7 /REP_DB=WormBase Gene ID /WP=CE14058 /TR=Q9XVI3 /GB=CAB03400.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060242 NCBI Caenorhabditis elegans T23D8.7 (T23D8.7) mRNA, complete cds. 11/11 A 
SNAP00000036753 ENSEMBL cdna:SNAP chromosome:CEL140:I:9997925:10001712:1 11/11 None
GENEFINDER00000036761 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9997925:10001821:1 11/11 None
T23D8.7 ENSEMBL cdna:known chromosome:CEL140:I:9997923:10002081:1 gene:T23D8.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9997855-10001566(+) 99.78 100.0
Public Domain and Genome References
Gene Title
Ensembl T23D8.7
Entrez Gene 172861 Entrez gene
SwissProt Q9XVI3 EMBL-EBI
WormBase CE14058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03400 Hypothetical protein T23D8.7 [Caenorhabditis elegans] ref|NP_492643.1| T23D8.7 [Caenorhabditis elegans] 0.0
blast CAE60213 Hypothetical protein CBG03777 [Caenorhabditis briggsae] 0.0
blast CAE56575 Hypothetical protein CBG24316 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.9E-55
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 9.2E-88
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 9.2E-88
Sequence
Target Sequence 
>C. ELEGANS:178018_AT
atctttcgtactcaaccacgtcatcaaagaactattgtcgatatgtgtgaaatgacacgt
gaagctattatcaatttccgaaagtctacaggatttaaaccccacaaaattatcatttat
cgtgctggaatcgcagatgtgactgtcgatgaaatcatgcaaacggaattacgtgctgta
cgggatgcatgtgctatgatcgaatacggtttccagccaggaatcacttttattgggtta
gatgtcactcatcatacgagactttttgcagctaatgaaaaagatcgcgtcggaaatagt
caaaatgtgccagctggaactctcgtggaaacaggaatcactgtgaataatctcttcgag
ttctacctcgtatcacatgcaggaattcaaggaacttctcgcccgacgaagtatgttgtc
atgtgggacgataattcaataccatctgccgatattcatgagatgacctatcagctatgt
cacactcaatccagatgcacaagaagcgtctccattccttcgccagtatactatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTTCGTACTCAACCACGTCATC 520 31 2086 Antisense
TGATCGAATACGGTTTCCAGCCAGG 432 565 2282 Antisense
GATGTCACTCATCATACGAGACTTT 229 409 2326 Antisense
TGCCAGCTGGAACTCTCGTGGAAAC 87 587 2393 Antisense
GTTCTACCTCGTATCACATGCAGGA 62 443 2445 Antisense
AGGAATTCAAGGAACTTCTCGCCCG 355 53 2466 Antisense
TTCTCGCCCGACGAAGTATGTTGTC 201 685 2481 Antisense
ATAATTCAATACCATCTGCCGATAT 484 25 2516 Antisense
GCTATGTCACACTCAATCCAGATGC 705 301 2559 Antisense
GCACAAGAAGCGTCTCCATTCCTTC 416 317 2582 Antisense
CCATTCCTTCGCCAGTATACTATGC 517 269 2597 Antisense
Sequence Source Affymetrix Proprietary Database