[Home] | [Total List]

[178017_s_at]

Description F01D5.1 /REP_DB=WormBase Gene ID /WP=CE18559 /TR=Q9XVB1 /GB=CAB04039.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 65      6grp_total > 80      4grp_total > 60      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3364
1 2 3 4 range
A 2995.9
(2.1)
P 		2680.6
(1.5)
P 		3481.4
(3)
P 		214.6
(-3)
P 		3267
B 3257.3
(3)
P 		2900
(2.3)
P 		3277.7
(3)
P 		117.5
(-3)
P 		3160
C 3231.9
(3)
P 		3122.4
(2.8)
P 		3055.3
(2.7)
P 		183.8
(-3)
P 		3048
avr 3161.7
(2.8) 		2901
(2.3) 		3271.5
(3) 		172
(-3) 		3100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1072
1 2 3 4 5 6 range
A 782.6
(-2.1)
P 		785.3
(-2.1)
P 		932
(-1.2)
P 		1619.6
(3)
P 		633.8
(-3)
P 		1217.1
(0.6)
P 		986
B 918.6
(-2.3)
P 		874.1
(-3)
P 		963.3
(-1.6)
P 		1256.2
(3)
P 		986.8
(-1.2)
P 		1175.9
(1.7)
P 		382
C 967.8
(-2.1)
P 		844.3
(-3)
P 		845.9
(-3)
P 		1705.3
(3)
P 		997.9
(-1.9)
P 		1385.2
(0.8)
P 		861
avr 889.7
(-2.5) 		834.6
(-3) 		913.7
(-2.3) 		1527
(3) 		872.8
(-2.7) 		1259.4
(0.7) 		692
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1066
1 2 3 4 range
A 1090.8
(3)
P 		581.9
(0.1)
P 		910.1
(2)
P 		31.4
(-3)
P 		1059
B 1038.7
(3)
P 		716.2
(1.1)
P 		759.5
(1.3)
P 		25
(-3)
P 		1014
C 1069.9
(3)
P 		897.7
(2)
P 		1064.9
(3)
P 		31
(-3)
P 		1039
avr 1066.5
(3) 		731.9
(1.1) 		911.5
(2.1) 		29.1
(-3) 		1037

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 144.3
(-3)
P 		279.3
(0)
P 		203
(-1.7)
P 		410.8
(3)
P 		191.3
(-1.9)
P 		296.3
(0.4)
P 		267
B 319.6
(-0.5)
P 		290.9
(-1.3)
P 		233.9
(-3)
P 		332.7
(-0.1)
P 		400.9
(1.9)
P 		438.5
(3)
P 		205
C 358.7
(0.5)
P 		257.6
(-2)
P 		215.3
(-3)
P 		342.9
(0.1)
P 		322.9
(-0.4)
P 		463.7
(3)
P 		248
avr 274.2
(-1.1) 		275.9
(-1.1) 		217.4
(-3) 		362.1
(1.8) 		305
(-0.1) 		399.5
(3) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178017_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2830
Sequence Type Exemplar sequence
Representative Public ID F01D5.1 NCBI
Target Description F01D5.1 /REP_DB=WormBase Gene ID /WP=CE18559 /TR=Q9XVB1 /GB=CAB04039.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064531 NCBI Caenorhabditis elegans F01D5.1 (F01D5.1) mRNA, complete cds. 11/11 None
SNAP00000039839 ENSEMBL cdna:SNAP chromosome:CEL140:II:13996867:13997463:-1 11/11 None
GENEFINDER00000039847 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13996867:14002691:-1 11/11 None
F01D5.1 ENSEMBL cdna:known chromosome:CEL140:II:13996848:13997463:-1 gene:F01D5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13996863-13997460(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01D5.1
Entrez Gene 175049 Entrez gene
SwissProt Q9XVB1 EMBL-EBI
WormBase CE18559 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04039 Hypothetical protein F01D5.1 [Caenorhabditis elegans] ref|NP_496932.1| F01D5.1 [Caenorhabditis elegans] 1.0E-111
blast CAB04039 Hypothetical protein F01D5.1 [Caenorhabditis elegans] ref|NP_496932.1| F01D5.1 [Caenorhabditis elegans] 1.0E-110
blast CAB60339 Hypothetical protein Y39G8B.7 [Caenorhabditis elegans] ref|NP_496930.1| Y39G8B.7 [Caenorhabditis elegans] 9.0E-66
blast CAB60339 Hypothetical protein Y39G8B.7 [Caenorhabditis elegans] ref|NP_496930.1| Y39G8B.7 [Caenorhabditis elegans] 6.0E-65
blast CAE73377 Hypothetical protein CBG20816 [Caenorhabditis briggsae] 3.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.8E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.2E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.2E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.9E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.2E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.8E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.2E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.2E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039847 1 68-90
Sequence
Target Sequence 
>C. ELEGANS:178017_S_AT
gctgtatttctaattttccttgcacaatttgcaaatgcccaggacaagccttgtatcgat
gatccgaatgtaaagtgcgaagatttcaaggatgattgtgctacagaaaaaatgatccca
ctgctgaaagagtcctgtcctgtgacctgcaagttgtgccctccgacagaagccccaacg
actcttgcaccatgttttgacgacaaagacaccgactgcgcttcattcaaacagttctgc
agtaacagtaagtacatcccaatgctgaagtcattctgcccggtgacgtgcaacatgtgc
ccgggagcaactactgtcatgccaaccccaaaccctaattgtcaggacaatggaccaaac
tgtgccggttgggtgaaaaacggatactgcaacaaatgcttctacaaatgctccgaacgt
gagaagtactgtgcaaagtcgtgcgggttctgcacgccgggaacatgcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTATTTCTAATTTTCCTTGCAC 700 295 25 Antisense
GCAAATGCCCAGGACAAGCCTTGTA 609 317 55 Antisense
ACTGCTGAAAGAGTCCTGTCCTGTG 213 99 144 Antisense
TGTCCTGTGACCTGCAAGTTGTGCC 570 557 160 Antisense
GCGCTTCATTCAAACAGTTCTGCAG 701 287 242 Antisense
CCAATGCTGAAGTCATTCTGCCCGG 296 269 283 Antisense
CCCGGTGACGTGCAACATGTGCCCG 458 257 303 Antisense
CATGTGCCCGGGAGCAACTACTGTC 327 209 318 Antisense
GGGAGCAACTACTGTCATGCCAACC 454 495 327 Antisense
CTGTGCAAAGTCGTGCGGGTTCTGC 544 239 453 Antisense
GTTCTGCACGCCGGGAACATGCAAG 540 443 471 Antisense
Sequence Source Affymetrix Proprietary Database