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[178016_at]

Description T11A5.4 /REP_DB=WormBase Gene ID /WP=CE06410 /TR=Q22384 /GB=CAA96684.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 27      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 4.5
(-2.7)
A 		32.6
(0.2)
A 		1.7
(-3)
A 		60.3
(3)
A 		59
B 2.9
(-2.6)
A 		20.5
(3)
A 		1.7
(-3)
A 		5.8
(-1.7)
A 		19
C 31.5
(-0.1)
A 		41.5
(1.2)
A 		8.4
(-3)
A 		56
(3)
A 		48
avr 13
(-1.5) 		31.5
(1.5) 		3.9
(-3) 		40.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 13.3
(-2)
A 		17.2
(-1.5)
A 		29.7
(0.1)
A 		5.4
(-3)
A 		19.1
(-1.2)
A 		52.1
(3)
A 		47
B 21.1
(1.1)
A 		3.7
(-2.8)
A 		29.7
(3)
A 		16.4
(0)
A 		6.4
(-2.2)
A 		2.7
(-3)
A 		27
C 14.4
(-3)
A 		57.4
(3)
A 		18.8
(-2.4)
A 		57.2
(3)
A 		17.3
(-2.6)
A 		27.8
(-1.1)
A 		43
avr 16.3
(-2.1) 		26.1
(2.4) 		26.1
(2.4) 		26.3
(2.5) 		14.3
(-3) 		27.5
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(-2.2)
A 		7.1
(1.8)
A 		0.5
(-3)
A 		8.8
(3)
A 		8
B 0.9
(-2.4)
A 		5.1
(3)
A 		0.4
(-3)
A 		1.2
(-2)
A 		5
C 10.4
(2)
A 		11.9
(3)
A 		2.9
(-3)
A 		9.4
(1.3)
A 		9
avr 4.3
(-0.3) 		8
(3) 		1.3
(-3) 		6.5
(1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.5
(-2.4)
A 		6.1
(-0.5)
A 		6.5
(-0.3)
A 		1.4
(-3)
A 		5.8
(-0.7)
A 		12.7
(3)
A 		11
B 7.3
(3)
A 		1.2
(-2.8)
A 		7.2
(2.9)
A 		4.3
(0.1)
A 		2.6
(-1.5)
A 		1
(-3)
A 		6
C 5.3
(-2.8)
A 		17.5
(3)
A 		4.8
(-3)
A 		11.5
(0.2)
A 		5.6
(-2.6)
A 		9.3
(-0.9)
A 		13
avr 5
(-2.5) 		8.3
(3) 		6.2
(-0.5) 		5.7
(-1.3) 		4.7
(-3) 		7.7
(2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12276
Sequence Type Exemplar sequence
Representative Public ID T11A5.4 NCBI
Target Description T11A5.4 /REP_DB=WormBase Gene ID /WP=CE06410 /TR=Q22384 /GB=CAA96684.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028963
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000037721 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9876137:9882817:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
T11A5.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9876750-9881347(-) 97.71 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T24823 hypothetical protein T11A5.4 - Caenorhabditis elegans 0.0
blast CAH60771 Hypothetical protein T11A5.7 [Caenorhabditis elegans] ref|NP_001024134.1| Serpentine Receptor, class AB (class A-like) family member (srab-26) [Caenorhabditis elegans] 1.0E-162
blast CAA96683 Hypothetical protein T11A5.3 [Caenorhabditis elegans] ref|NP_505545.2| Serpentine Receptor, class AB (class A-like) family member (srab-18) [Caenorhabditis elegans] 1.0E-139
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000037721 14 28-50,65-87,94-116,144-166,179-201,227-249,280-299,309-331,356-378,398-417,481-503,523-545,584-606,611-630
Sequence
Target Sequence 
>C. ELEGANS:178016_AT
ggtttttttccagtttgctatcacatcaattccactttgcattttatactcgaaagttca
gttcgaaggagtcgttatgtatttgtgtgtcacagcccaagccaatatcccgtacgtagg
tcaaataagtgcagtggtcggtttcatgttccaattatctacccgaatctccttccatta
cctctacaaacaaaataaacgctgtagacataacgaagttcaccattcaacgctttcaaa
acgatatcaacttgaacaaaatatcagctcaattcactgtctaaaaacgtttgctggtgt
ttcaactatgttcatagttatgagtaacgtaatctacattatattaatgttccacgcaaa
aaatctaaatccgtatcagtactttggtacccccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTTTTCCAGTTTGCTATCACA 165 507 1446 Antisense
GTTTGCTATCACATCAATTCCACTT 369 451 1458 Antisense
ATTCCACTTTGCATTTTATACTCGA 593 7 1474 Antisense
ATTTGTGTGTCACAGCCCAAGCCAA 80 19 1526 Antisense
CAAGCCAATATCCCGTACGTAGGTC 530 185 1543 Antisense
AGTGCAGTGGTCGGTTTCATGTTCC 304 59 1573 Antisense
TTTCATGTTCCAATTATCTACCCGA 488 671 1587 Antisense
AAGTTCACCATTCAACGCTTTCAAA 225 157 1661 Antisense
ATATCAGCTCAATTCACTGTCTAAA 187 21 1706 Antisense
AACGTTTGCTGGTGTTTCAACTATG 388 143 1731 Antisense
CGTATCAGTACTTTGGTACCCCCAG 472 247 1817 Antisense
Sequence Source Affymetrix Proprietary Database