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[178015_at]

Description R160.5 /REP_DB=WormBase Gene ID /WP=CE19555 /TR=Q9TZD3 /GB=AAC68734.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 34.8
(1.3)
A 		45.9
(3)
A 		7
(-3)
A 		45.5
(2.9)
A 		39
B 36.9
(-0.2)
P 		58
(3)
A 		18.6
(-3)
A 		44.6
(1)
A 		39
C 33.3
(-3)
A 		56.8
(2.1)
A 		54.5
(1.6)
A 		60.9
(3)
A 		28
avr 35
(-1.1) 		53.6
(3) 		26.7
(-3) 		50.3
(2.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 9.3
(-2.3)
A 		6.7
(-2.6)
A 		62.1
(3)
P 		7.1
(-2.5)
A 		7.6
(-2.5)
A 		2.6
(-3)
A 		60
B 33.6
(2.6)
A 		35.9
(3)
A 		3.9
(-3)
A 		26.1
(1.2)
A 		33
(2.5)
A 		18
(-0.4)
A 		32
C 36.5
(2.9)
A 		19.5
(-0.7)
A 		19
(-0.8)
A 		8.3
(-3)
A 		17.3
(-1.1)
A 		37.2
(3)
A 		29
avr 26.5
(2.3) 		20.7
(-0.1) 		28.3
(3) 		13.8
(-3) 		19.3
(-0.7) 		19.3
(-0.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 12.7
(3)
A 		10
(1.5)
A 		1.8
(-3)
A 		6.7
(-0.3)
A 		11
B 11.8
(1.5)
P 		14.3
(3)
A 		4.3
(-3)
A 		9.5
(0.1)
A 		10
C 11
(-2.5)
A 		16.3
(1.1)
A 		19
(3)
A 		10.3
(-3)
A 		9
avr 11.8
(1) 		13.5
(3) 		8.4
(-3) 		8.8
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.7
(-2.5)
A 		2.4
(-2.2)
A 		13.5
(3)
P 		1.8
(-2.4)
A 		2.3
(-2.2)
A 		0.6
(-3)
A 		13
B 11.7
(2.2)
A 		11.9
(2.3)
A 		0.9
(-3)
A 		6.9
(-0.1)
A 		13.4
(3)
A 		6.7
(-0.2)
A 		13
C 13.5
(3)
A 		6
(-0.8)
A 		4.8
(-1.4)
A 		1.7
(-3)
A 		5.6
(-1)
A 		12.5
(2.5)
A 		12
avr 9
(3) 		6.8
(0.6) 		6.4
(0.2) 		3.5
(-3) 		7.1
(0.9) 		6.6
(0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16561
Sequence Type Exemplar sequence
Representative Public ID R160.5 NCBI
Target Description R160.5 /REP_DB=WormBase Gene ID /WP=CE19555 /TR=Q9TZD3 /GB=AAC68734.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076352 NCBI Caenorhabditis elegans R160.5 (R160.5) mRNA, complete cds. 11/11 None
GENEFINDER00000044079 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4367591:4370827:-1 10/11 None
SNAP00000044069 ENSEMBL cdna:SNAP chromosome:CEL140:X:4370469:4370827:-1 11/11 None
R160.5 ENSEMBL cdna:known chromosome:CEL140:X:4370469:4370827:-1 gene:R160.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4370469-4370828(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R160.5
Entrez Gene 187914 Entrez gene
SwissProt Q9TZD3 EMBL-EBI
WormBase CE19555 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68734 Hypothetical protein R160.5 [Caenorhabditis elegans] ref|NP_508753.1| R160.5 [Caenorhabditis elegans] 5.0E-54
blast AAC68734 Hypothetical protein R160.5 [Caenorhabditis elegans] ref|NP_508753.1| R160.5 [Caenorhabditis elegans] 4.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508753.1 1 10-29
R160.5 1 10-29
GENEFINDER00000044079 3 10-29,101-123,178-200
SNAP00000044069 1 10-29
Sequence
Target Sequence 
>C. ELEGANS:178015_AT
tcaaaaacccagccatccagtttgccttcgtggttattttagtatgcgcactagcggtgt
gcatctgcatgctcatcgagagggccgacggatttttctgcccattgcctccagaagagc
tccggcgtattgtgaacactattccaccaaggaccccaatcgcagctcctgttaaccgtt
gccaagttgttattaaaattgatcccacagaaagcgatgttgacatgaccagtgagaacg
aaacaccgatactcgggtacgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAACCCAGCCATCCAGTTTGC 5 629 26 Antisense
CATCCAGTTTGCCTTCGTGGTTATT 692 209 39 Antisense
TGCGCACTAGCGGTGTGCATCTGCA 520 583 70 Antisense
GCATCTGCATGCTCATCGAGAGGGC 430 307 86 Antisense
AGGGCCGACGGATTTTTCTGCCCAT 505 57 106 Antisense
CTCCAGAAGAGCTCCGGCGTATTGT 33 233 134 Antisense
AGCTCCGGCGTATTGTGAACACTAT 42 81 143 Antisense
TTGTGAACACTATTCCACCAAGGAC 21 707 155 Antisense
CTCCTGTTAACCGTTGCCAAGTTGT 646 231 191 Antisense
GATCCCACAGAAAGCGATGTTGACA 300 417 226 Antisense
GAAACACCGATACTCGGGTACGAGA 161 353 265 Antisense
Sequence Source Affymetrix Proprietary Database