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[178014_s_at]

Description W06D4.4 /REP_DB=WormBase Gene ID /WP=CE16546 /TR=Q9XW42 /GB=CAA22252.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 64      6grp_total > 64      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 798
(3)
P 		633.8
(-2)
P 		602.2
(-3)
P 		772
(2.2)
P 		196
B 798.7
(3)
P 		626.7
(-3)
P 		651.2
(-2.1)
P 		658.9
(-1.9)
P 		172
C 832.4
(3)
P 		695.4
(-1.4)
P 		757.5
(0.6)
P 		643.6
(-3)
P 		189
avr 809.7
(3) 		652
(-3) 		670.3
(-2.3) 		691.5
(-1.5) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 655.8
(-3)
P 		761.8
(-1)
P 		916.8
(1.9)
P 		974.2
(3)
P 		703.1
(-2.1)
P 		938.7
(2.3)
P 		318
B 717.6
(-3)
P 		817.3
(-0.7)
P 		976.4
(3)
P 		814.8
(-0.7)
P 		770.6
(-1.8)
P 		898.5
(1.2)
P 		259
C 762
(-0.8)
P 		810.3
(0.1)
P 		946.9
(2.5)
P 		975.4
(3)
P 		635.3
(-3)
P 		963
(2.8)
P 		340
avr 711.8
(-2.8) 		796.5
(-0.7) 		946.7
(3) 		921.5
(2.4) 		703
(-3) 		933.4
(2.7) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 290.5
(3)
P 		137.6
(-2.2)
P 		157.4
(-1.5)
P 		113
(-3)
P 		178
B 254.7
(3)
P 		154.8
(-2.2)
P 		150.9
(-2.4)
P 		140.4
(-3)
P 		114
C 275.5
(3)
P 		199.9
(0.3)
P 		264
(2.6)
P 		108.5
(-3)
P 		167
avr 273.6
(3) 		164.1
(-1.3) 		190.8
(-0.2) 		120.6
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 120.9
(-3)
P 		270.9
(3)
P 		199.7
(0.2)
P 		247.1
(2)
P 		212.2
(0.7)
P 		228.5
(1.3)
P 		150
B 249.7
(-1.3)
P 		272
(-0.2)
P 		237.1
(-1.9)
P 		215.8
(-3)
P 		313.1
(1.9)
P 		335.1
(3)
P 		119
C 282.4
(1.1)
P 		247.3
(-0.6)
P 		241
(-0.9)
P 		196.2
(-3)
P 		205.6
(-2.6)
P 		322.4
(3)
P 		126
avr 217.7
(-3) 		263.4
(0.5) 		225.9
(-2.4) 		219.7
(-2.8) 		243.6
(-1) 		295.3
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.462
Sequence Type Exemplar sequence
Representative Public ID W06D4.4 NCBI
Target Description W06D4.4 /REP_DB=WormBase Gene ID /WP=CE16546 /TR=Q9XW42 /GB=CAA22252.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060035 NCBI Caenorhabditis elegans W06D4.4 (W06D4.4) mRNA, complete cds. 11/11 None
SNAP00000003039 ENSEMBL cdna:SNAP chromosome:CEL140:I:9068686:9071271:-1 11/11 None
GENEFINDER00000003042 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9068686:9071271:-1 11/11 None
W06D4.4.1 ENSEMBL cdna:known chromosome:CEL140:I:9068637:9071284:-1 gene:W06D4.4 11/11 None
W06D4.4.2 ENSEMBL cdna:known chromosome:CEL140:I:9068643:9071285:-1 gene:W06D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9068616-9071202(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D4.4
Entrez Gene 172727 Entrez gene
SwissProt Q9XW42 EMBL-EBI
WormBase CE16546 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245268_AT protein arginine N-methyltransferase-related at
CANINE:1584183_S_AT similar to Protein arginine N-methyltransferase cfa
CANINE:1584182_AT similar to Protein arginine N-methyltransferase cfa
CANINE_2:CFA.18437.1.S1_AT similar to Protein arginine N-methyltransferase cfa
CANINE_2:CFA.18437.1.S1_S_AT similar to Protein arginine N-methyltransferase cfa
CANINE_2:CFA.6514.1.A1_S_AT similar to Protein arginine N-methyltransferase cfa
CANINE_2:CFA.8639.1.A1_S_AT similar to Protein arginine N-methyltransferase cfa
DROSOPHILA_2:1632151_AT Arginine methyltransferase 7 dm
DROSGENOME1:147738_AT Arginine methyltransferase 7 dm
CHICKEN:GGAAFFX.525.3.S1_S_AT arginine N-methyltransferase gga
HU35KSUBC:RC_AA478952_AT protein arginine N-methyltransferase 7 hs
HU35KSUBC:RC_AA427825_AT protein arginine N-methyltransferase 7 hs
HG-U133A:219408_AT protein arginine N-methyltransferase 7 hs
HG-U133_PLUS_2:219408_AT protein arginine N-methyltransferase 7 hs
HG-U133A_2:219408_AT protein arginine N-methyltransferase 7 hs
U133_X3P:G9506614_3P_AT protein arginine N-methyltransferase 7 hs
HG-U95B:48349_AT protein arginine N-methyltransferase 7 hs
HG-U95D:84653_AT protein arginine N-methyltransferase 7 hs
MOE430A:1426096_AT cDNA sequence BC006705 mm
MOUSE430_2:1426096_AT cDNA sequence BC006705 mm
MOUSE430A_2:1426096_AT cDNA sequence BC006705 mm
MG-U74BV2:164643_I_AT cDNA sequence BC006705 mm
MG-U74BV2:164325_F_AT cDNA sequence BC006705 mm
MOE430A:1451248_AT cDNA sequence BC006705 mm
MOUSE430A_2:1451248_AT cDNA sequence BC006705 mm
MOUSE430_2:1451248_AT cDNA sequence BC006705 mm
MOE430B:1443011_AT cDNA sequence BC006705 mm
MOUSE430_2:1443011_AT cDNA sequence BC006705 mm
MG-U74CV2:132364_I_AT CDNA sequence BC006705 (BC006705), mRNA mm
MG-U74CV2:132365_R_AT CDNA sequence BC006705 (BC006705), mRNA mm
MU19KSUBA:TC24074_AT CDNA sequence BC006705 (BC006705), mRNA mm
MU19KSUBA:TC25175_AT CDNA sequence BC006705 (BC006705), mRNA mm
MU19KSUBC:TC35427_AT CDNA sequence BC006705 (BC006705), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA22252 Hypothetical protein W06D4.4 [Caenorhabditis elegans] ref|NP_492436.1| W06D4.4 [Caenorhabditis elegans] 0.0
blast CAE67031 Hypothetical protein CBG12433 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178014_S_AT
gattcaccagatatcgttctcgctgagccattctacatgtctgctatgaatccatggaat
catttgaggtttttgtatgatgtggaagtgctgaaaatgatgcatggagatgaattaaga
gtggaaccacatatgggagtactgaaagccatacccgaaaaattcgaagatcttcaaaat
attgcatcagatgttggaacagtgaatggtttcgatctatcatttttcgatgaaatttcc
acaaaagcacgtacagcaactgatgccattgttgacgaacaatcgttatgggaatatgca
ggaattgtgaaaggggatgctgttgaaattctaagatttccgattgatggacgtgtttca
agtcaaaaatgcgtagtgaatattgataacatgagttcctctaacgcaattccaatgtgg
atggaatgggaatttggcggaatcaatctatcaactggacttttgtcaatatcttctgca
ggagttccagaatggaataagggatacaagcaaggtgtctattttcctatcactgcactt
cggaatgataaatccctctgtctacatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCACCAGATATCGTTCTCGCTG 136 431 1276 Antisense
GCTGAGCCATTCTACATGTCTGCTA 74 297 1297 Antisense
ATGTCTGCTATGAATCCATGGAATC 677 47 1312 Antisense
GGGAGTACTGAAAGCCATACCCGAA 496 493 1410 Antisense
GAATGGTTTCGATCTATCATTTTTC 680 331 1479 Antisense
AGCACGTACAGCAACTGATGCCATT 354 77 1521 Antisense
CATGAGTTCCTCTAACGCAATTCCA 615 209 1665 Antisense
GGCGGAATCAATCTATCAACTGGAC 134 541 1711 Antisense
GTCAATATCTTCTGCAGGAGTTCCA 490 463 1740 Antisense
GGTGTCTATTTTCCTATCACTGCAC 559 499 1789 Antisense
TGATAAATCCCTCTGTCTACATGCA 410 565 1821 Antisense
Sequence Source Affymetrix Proprietary Database