[Home] | [Total List]

[178013_at]

Description F02H6.1 /REP_DB=WormBase Gene ID /WP=CE17625 /TR=O62130 /GB=CAB05170.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 6.6
(3)
A 		3.3
(-2.1)
A 		2.7
(-3)
A 		6
(2.1)
A 		4
B 7.3
(-1.8)
A 		2.3
(-3)
A 		28.1
(3)
A 		2.3
(-3)
A 		26
C 13.6
(-0.7)
A 		3.2
(-2.8)
A 		2.3
(-3)
A 		32.2
(3)
A 		30
avr 9.2
(0.6) 		2.9
(-3) 		11
(1.6) 		13.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.2
(-2.8)
A 		15.9
(-0.3)
A 		20.2
(0.6)
A 		3.2
(-3)
A 		16.1
(-0.3)
A 		31.8
(3)
A 		29
B 3.8
(-2.9)
A 		3.5
(-3)
A 		22.1
(3)
A 		7.9
(-1.6)
A 		4.9
(-2.5)
A 		7
(-1.9)
A 		19
C 1.8
(-3)
A 		41.2
(3)
A 		3.9
(-2.7)
A 		9.8
(-1.8)
A 		6.8
(-2.2)
A 		4.1
(-2.6)
A 		39
avr 3.3
(-3) 		20.2
(3) 		15.4
(1.3) 		7
(-1.7) 		9.3
(-0.9) 		14.3
(0.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.4
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.9
(-2.3)
A 		2
B 2.3
(-1.2)
A 		0.6
(-2.9)
A 		6.5
(3)
A 		0.5
(-3)
A 		6
C 4.5
(1.8)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		5.4
(3)
A 		5
avr 3.1
(3) 		0.7
(-3) 		2.7
(2) 		2.3
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-3)
A 		5.7
(1.3)
A 		4.4
(0.1)
A 		0.8
(-3)
A 		4.9
(0.6)
A 		7.7
(3)
A 		7
B 1.3
(-2.9)
A 		1.2
(-3)
A 		5.4
(3)
A 		2.1
(-1.7)
A 		2
(-1.9)
A 		2.6
(-1)
A 		4
C 0.7
(-3)
A 		12.6
(3)
A 		1
(-2.8)
A 		2
(-2.3)
A 		2.2
(-2.2)
A 		1.4
(-2.6)
A 		12
avr 0.9
(-3) 		6.5
(3) 		3.6
(-0.1) 		1.6
(-2.3) 		3
(-0.8) 		3.9
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10177
Sequence Type Exemplar sequence
Representative Public ID F02H6.1 NCBI
Target Description F02H6.1 /REP_DB=WormBase Gene ID /WP=CE17625 /TR=O62130 /GB=CAB05170.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070324 NCBI Caenorhabditis elegans F02H6.1 (F02H6.1) mRNA, complete cds. 11/11 None
SNAP00000026608 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14199232:14201749:1 11/11 None
GENEFINDER00000026629 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14199232:14201749:1 11/11 None
F02H6.1 ENSEMBL cdna:known chromosome:CEL140:IV:14200460:14201749:1 gene:F02H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14200465-14201755(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02H6.1
Entrez Gene 184101 Entrez gene
SwissProt O62130 EMBL-EBI
WormBase CE17625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05170 Hypothetical protein F02H6.1 [Caenorhabditis elegans] ref|NP_502725.1| F02H6.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178013_AT
gaatcaacccagatattgtcgcggaaggtatcccacatcacaacaatagagataatatac
cgattgaacgacaatacagaacagagttcattcaattagcgaatgatttacaaagtccgc
cagatgatgtgaggcttgatgtgttccggcgcctgattgacctgggtgtacagttccaag
aatcgagattggagcaagaccgtcagagaatccaggaagaaccacaacggcagagagaag
gtgaaatcatggatcagctcaatgattcggttaaaggagatatgcgcagattaaatccga
tggctcctggaaatgcctcggggaacattcaacaagaaggagctggtattgaaactgatg
tggatgttgacgatgagctggaggatgagtatagtggaagtgacagttcacaagatgttg
aggaggtgccagaagaaagttcagaaagatacgtagctgacactgggagtgctacaaatc
agccttcaagtagcacttcagagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAACCCAGATATTGTCGCGGA 550 325 599 Antisense
TTGTCGCGGAAGGTATCCCACATCA 480 705 614 Antisense
GATTTACAAAGTCCGCCAGATGATG 178 429 703 Antisense
ATGTGAGGCTTGATGTGTTCCGGCG 578 49 725 Antisense
GCGCCTGATTGACCTGGGTGTACAG 25 287 747 Antisense
GAATCCAGGAAGAACCACAACGGCA 122 327 806 Antisense
GCAGATTAAATCCGATGGCTCCTGG 606 311 884 Antisense
GCTCCTGGAAATGCCTCGGGGAACA 637 297 901 Antisense
GATACGTAGCTGACACTGGGAGTGC 657 423 1046 Antisense
GGGAGTGCTACAAATCAGCCTTCAA 264 493 1063 Antisense
AGCCTTCAAGTAGCACTTCAGAGCC 314 83 1079 Antisense
Sequence Source Affymetrix Proprietary Database