[Home] | [Total List]

[178012_at]

Description F10A3.8 /REP_DB=WormBase Gene ID /WP=CE15774 /TR=O45337 /GB=CAB07342.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 04      6grp_total > 02      4grp_total > 13      6grp_cgc > 52      6grp_high1_sub > 02_03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 78
(-1.5)
P 		59.4
(-3)
P 		78.9
(-1.4)
P 		134.7
(3)
P 		75
B 112.8
(3)
P 		45.6
(-3)
A 		60.2
(-1.7)
P 		75.4
(-0.3)
P 		67
C 88.5
(-0.9)
P 		90.7
(-0.8)
P 		40.4
(-3)
M 		178.5
(3)
P 		138
avr 93.1
(-0.1) 		65.2
(-2.5) 		59.8
(-3) 		129.5
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 83.9
(2.5)
P 		67.3
(1)
P 		89.6
(3)
P 		76.9
(1.9)
P 		72.1
(1.4)
P 		23.2
(-3)
A 		66
B 50.7
(-3)
P 		61
(-1.1)
P 		75.5
(1.6)
P 		54.6
(-2.3)
A 		83.2
(3)
P 		60.2
(-1.2)
P 		33
C 46.5
(-1.8)
P 		112.6
(3)
P 		30.5
(-3)
A 		70
(-0.1)
P 		48.2
(-1.7)
P 		46.2
(-1.9)
M 		82
avr 60.4
(-0.2) 		80.3
(3) 		65.2
(0.6) 		67.2
(0.9) 		67.8
(1) 		43.2
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 28.4
(3)
P 		12.9
(-3)
P 		20.6
(-0)
P 		19.7
(-0.4)
P 		16
B 36
(3)
P 		11.3
(-3)
A 		13.9
(-2.4)
P 		16.1
(-1.8)
P 		25
C 29.3
(2.7)
P 		26.1
(1.5)
P 		14.1
(-3)
M 		30.1
(3)
P 		16
avr 31.2
(3) 		16.8
(-2.8) 		16.2
(-3) 		22
(-0.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.5
(0.2)
P 		23.9
(3)
P 		19.5
(1.6)
P 		19.5
(1.6)
P 		21.8
(2.3)
P 		5.6
(-3)
A 		18
B 17.7
(-2)
P 		20.3
(-1.2)
P 		18.3
(-1.8)
P 		14.5
(-3)
A 		33.8
(3)
P 		22.5
(-0.5)
P 		19
C 17.2
(-0.9)
P 		34.3
(3)
P 		7.8
(-3)
A 		14.1
(-1.6)
P 		15.6
(-1.2)
P 		15.5
(-1.3)
M 		27
avr 16.8
(-1.8) 		26.2
(3) 		15.2
(-2.6) 		16
(-2.2) 		23.7
(1.7) 		14.5
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14110
Sequence Type Exemplar sequence
Representative Public ID F10A3.8 NCBI
Target Description F10A3.8 /REP_DB=WormBase Gene ID /WP=CE15774 /TR=O45337 /GB=CAB07342.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074667 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-97) (str-97) mRNA, complete cds. 11/11 None
GENEFINDER00000000108 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16156438:16157668:-1 11/11 None
F10A3.8 ENSEMBL cdna:known chromosome:CEL140:V:16156525:16157668:-1 gene:F10A3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16156524-16157668(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-97
Ensembl F10A3.8
Entrez Gene 184278 Entrez gene
SwissProt O45337 EMBL-EBI
WormBase CE15774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07342 Hypothetical protein F10A3.8 [Caenorhabditis elegans] ref|NP_507068.1| Seven TM Receptor family member (str-97) [Caenorhabditis elegans] 0.0
blast CAB07342 Hypothetical protein F10A3.8 [Caenorhabditis elegans] ref|NP_507068.1| Seven TM Receptor family member (str-97) [Caenorhabditis elegans] 1.0E-171
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 5.0E-95
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 1.0E-91
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 2.0E-88
blast CAB04640 Hypothetical protein R08H2.13 [Caenorhabditis elegans] ref|NP_506822.1| Seven TM Receptor family member (str-102) [Caenorhabditis elegans] 4.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.7E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.3E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.3E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507068.1 7 10-32,45-64,94-116,129-151,203-225,253-275,285-307
F10A3.8 7 10-32,45-64,94-116,129-151,203-225,253-275,285-307
GENEFINDER00000000108 7 10-32,45-64,94-116,129-151,203-225,238-260,270-292
Sequence
Target Sequence 
>C. ELEGANS:178012_AT
gttacctatccgtaatgtttcctgtaaaactcgttagattctctgttagaaatctaccat
tttggatattacttgttattttaaacgcatccgtgtggtttttactgaacagtttagtaa
atgggccttctgaaattcaagatgcaattttaatacccgaaattcgacagagagcttgtc
tggagcgccatgagtacacctacgttggaaatgtgtttttgtatcaggattttgaaacaa
ataccaggaaaatcaacattattgctttcctttcttttggaataattggatcagttatga
ctttttctctggccactttgggatattttggtgcgaaaacatatttccatctcaaaaaaa
tctcatcattagcagtgagctaccaggaaattcaaagacagctcttccaaacacttgtta
ttcaaaccatcataccaattacatttttgtacacaccagtaacccttatgtatttatttc
ctgtttttggaattcaatttgtggaaattggatatatcgctccaccattagtggcactat
atccatgcctggagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACCTATCCGTAATGTTTCCTGT 133 447 359 Antisense
AACGCATCCGTGTGGTTTTTACTGA 391 141 442 Antisense
CAGAGAGCTTGTCTGGAGCGCCATG 24 207 526 Antisense
GCGCCATGAGTACACCTACGTTGGA 43 287 543 Antisense
AACATTATTGCTTTCCTTTCTTTTG 41 139 613 Antisense
CTTTTTCTCTGGCCACTTTGGGATA 370 223 659 Antisense
AAGACAGCTCTTCCAAACACTTGTT 684 151 753 Antisense
TTTTGTACACACCAGTAACCCTTAT 322 677 803 Antisense
GTAACCCTTATGTATTTATTTCCTG 145 461 817 Antisense
GGATATATCGCTCCACCATTAGTGG 314 509 868 Antisense
GGCACTATATCCATGCCTGGAGCCA 630 535 891 Antisense
Sequence Source Affymetrix Proprietary Database