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[178011_s_at]

Description C14B1.9 /REP_DB=WormBase Gene ID /WP=CE00906 /TR=Q17966 /GB=CAA85490.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 53.4
(-1.1)
A 		18.4
(-3)
A 		104.6
(1.6)
A 		130.2
(3)
P 		112
B 31.3
(-2.6)
A 		82.6
(-1.5)
A 		15.1
(-3)
A 		292.3
(3)
P 		277
C 15.7
(-3)
A 		64.6
(-2.2)
A 		22.7
(-2.9)
A 		368.3
(3)
P 		353
avr 33.5
(-3) 		55.2
(-2.4) 		47.5
(-2.6) 		263.6
(3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 82.2
(-2.8)
A 		67.1
(-3)
A 		112.1
(-2.5)
P 		216.3
(-1.4)
P 		373.3
(0.2)
P 		633.2
(3)
P 		566
B 85.6
(-2.2)
A 		11.7
(-3)
A 		64.1
(-2.5)
A 		166.4
(-1.4)
P 		345.3
(0.5)
P 		590.2
(3)
P 		579
C 93.9
(-2.9)
A 		97.1
(-2.9)
A 		86.9
(-3)
A 		248.9
(-1.3)
P 		311
(-0.6)
P 		654.3
(3)
P 		567
avr 87.2
(-2.7) 		58.6
(-3) 		87.7
(-2.7) 		210.5
(-1.4) 		343.2
(0) 		625.9
(3) 		567
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 19.5
(1)
A 		4
(-3)
A 		27.4
(3)
A 		19.1
(0.9)
P 		23
B 10
(-2.3)
A 		20.4
(-1.3)
A 		3.5
(-3)
A 		62.3
(3)
P 		59
C 5.2
(-3)
A 		18.6
(-1.6)
A 		7.9
(-2.7)
A 		62.1
(3)
P 		57
avr 11.6
(-3) 		14.3
(-2.6) 		12.9
(-2.8) 		47.8
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 15.2
(-3)
A 		23.9
(-2.6)
A 		24.4
(-2.6)
P 		54.9
(-1.3)
P 		112.6
(1.2)
P 		154.2
(3)
P 		139
B 29.8
(-2.3)
A 		3.9
(-3)
A 		15.6
(-2.7)
A 		44.1
(-1.9)
P 		140.3
(0.8)
P 		220.1
(3)
P 		216
C 34.8
(-2.6)
A 		29.6
(-2.8)
A 		22.1
(-3)
A 		50
(-2.1)
P 		100.6
(-0.6)
P 		219
(3)
P 		197
avr 26.6
(-2.7) 		19.1
(-3) 		20.7
(-2.9) 		49.7
(-2) 		117.8
(0.3) 		197.8
(3) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178011_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6914
Sequence Type Exemplar sequence
Representative Public ID C14B1.9 NCBI
Target Description C14B1.9 /REP_DB=WormBase Gene ID /WP=CE00906 /TR=Q17966 /GB=CAA85490.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065354 NCBI Caenorhabditis elegans C14B1.9 (C14B1.9) mRNA, complete cds. 11/11 None
SNAP00000040966 ENSEMBL cdna:SNAP chromosome:CEL140:III:3724255:3724952:-1 9/11 None
C14B1.9 ENSEMBL cdna:known chromosome:CEL140:III:3724255:3726476:-1 gene:C14B1.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040967 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3724254-3726476(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14B1.9
Entrez Gene 175480 Entrez gene
SwissProt Q17966 EMBL-EBI
WormBase CE00906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85490 Hypothetical protein C14B1.9 [Caenorhabditis elegans] ref|NP_497755.1| C14B1.9 [Caenorhabditis elegans] 0.0
blast CAE64487 Hypothetical protein CBG09212 [Caenorhabditis briggsae] 1.0E-170
blast CAA85490 Hypothetical protein C14B1.9 [Caenorhabditis elegans] ref|NP_497755.1| C14B1.9 [Caenorhabditis elegans] 3.0E-90
blast CAE64487 Hypothetical protein CBG09212 [Caenorhabditis briggsae] 7.0E-24
Sequence
Target Sequence 
>C. ELEGANS:178011_S_AT
cgacttccaaacccgatgctaaaatcccggagagcaaaactcgtgcatgccgagaagcgg
aatctaatgatccacaatcgagaaattctggagcaacagctattatttccactgtttcct
gccttgttgctttgaacattataatgtcgggtgtctacaataattctggaagtagaatga
ggtcgaagaactttgagaagcatcaggttccgtcggatatggcttttttccaaaagttcc
gcaagcaatcacattccaacgagacagtagattgcaaaaagaaacaagaggagagagttc
gcgaaccgcctgcacaggagaaaatcaagacgccagaaaaaatctcctgcgatccctccg
aagtcagggaagacgcagaggatggcagtgagatacagccagtcaaaagtgccggaagaa
ttccattcgtcaaactgatgccatcgcgaaacgaactggagtgggaagacgctggatcac
aaactgatcattcggatgtgtccgatggccattactccgacgagacagtcgaggagaagc
acaatcgagagcatcgaaataagacgaaggctgacaatagaactcgccgtatcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACTTCCAAACCCGATGCTAAAAT 32 251 1061 Antisense
GGAGAGCAAAACTCGTGCATGCCGA 209 519 1089 Antisense
TGAGAAGCATCAGGTTCCGTCGGAT 557 567 1254 Antisense
TCCGTCGGATATGGCTTTTTTCCAA 421 593 1269 Antisense
GTTCCGCAAGCAATCACATTCCAAC 567 441 1296 Antisense
AGAGGAGAGAGTTCGCGAACCGCCT 212 69 1347 Antisense
CAGAAAAAATCTCCTGCGATCCCTC 440 205 1394 Antisense
CATTCGTCAAACTGATGCCATCGCG 444 215 1484 Antisense
GGGAAGACGCTGGATCACAAACTGA 74 493 1523 Antisense
TGGCCATTACTCCGACGAGACAGTC 581 543 1566 Antisense
TGACAATAGAACTCGCCGTATCGCT 336 571 1632 Antisense
Sequence Source Affymetrix Proprietary Database