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[178010_s_at]

Description R02D5.7 /REP_DB=WormBase Gene ID /WP=CE18103 /TR=O62323 /GB=CAB01436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.3
(-0.9)
A 		3.2
(-3)
A 		9.8
(1.6)
A 		11.9
(3)
A 		9
B 1.7
(-3)
A 		3
(0.4)
A 		4
(3)
A 		2
(-2.2)
A 		2
C 3.2
(-3)
A 		3.6
(-2.7)
A 		11
(2.4)
A 		11.9
(3)
A 		9
avr 3.7
(-2.5) 		3.3
(-3) 		8.3
(2.7) 		8.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.6
(-1.7)
A 		5.2
(-0.4)
A 		1.9
(-3)
A 		9.5
(3)
A 		3.5
(-1.7)
A 		3.7
(-1.6)
A 		8
B 7.3
(-0.9)
A 		7.2
(-0.9)
A 		5.7
(-1.7)
A 		3.1
(-3)
A 		14.9
(3)
A 		6.4
(-1.3)
A 		12
C 3.4
(-1.3)
A 		4.7
(0.1)
A 		1.9
(-3)
A 		5.7
(1.2)
A 		7.3
(3)
A 		2.8
(-2)
A 		5
avr 4.8
(-1.2) 		5.7
(-0.2) 		3.2
(-3) 		6.1
(0.2) 		8.6
(3) 		4.3
(-1.8) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.3
(2.1)
A 		0.7
(-3)
A 		2.6
(3)
A 		1.7
(0.2)
A 		2
B 0.5
(-1.8)
A 		0.8
(1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		1
C 1.1
(-2.8)
A 		1
(-3)
A 		3.8
(3)
A 		2
(-0.9)
A 		3
avr 1.3
(-1.1) 		0.8
(-3) 		2.4
(3) 		1.4
(-0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-2.1)
A 		1.8
(1.2)
A 		0.4
(-3)
A 		2.4
(3)
A 		1.1
(-0.9)
A 		0.9
(-1.5)
A 		2
B 2.5
(-1.1)
A 		2.4
(-1.2)
A 		1.4
(-2.3)
A 		0.8
(-3)
A 		6.1
(3)
A 		2.4
(-1.2)
A 		5
C 1.3
(-0.5)
A 		1.4
(-0.2)
A 		0.5
(-3)
A 		1.2
(-0.8)
A 		2.4
(3)
A 		0.9
(-1.7)
A 		2
avr 1.5
(-1.3) 		1.9
(-0.3) 		0.8
(-3) 		1.5
(-1.3) 		3.2
(3) 		1.4
(-1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178010_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14329
Sequence Type Exemplar sequence
Representative Public ID R02D5.7 NCBI
Target Description R02D5.7 /REP_DB=WormBase Gene ID /WP=CE18103 /TR=O62323 /GB=CAB01436.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068682, NM_074191
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R02D5.7 ENSEMBL cdna:known chromosome:CEL140:V:14483005:14483853:-1 gene:R02D5.7 None
NM_074191 NCBI Caenorhabditis elegans R02D5.7 (R02D5.7) mRNA, complete cds. None
GENEFINDER00000007924 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14483005:14484314:-1 None
SNAP00000010524 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7010257:7010728:1 None
GENEFINDER00000010526 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7010257:7010728:1 None
SNAP00000007912 ENSEMBL cdna:SNAP chromosome:CEL140:V:14483005:14483449:-1 None
C25A8.2 ENSEMBL cdna:known chromosome:CEL140:IV:7009825:7010728:1 gene:C25A8.2 None
NM_068682 NCBI Caenorhabditis elegans C25A8.2 (C25A8.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14483004-14483686(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C25A8.2
R02D5.7
Entrez Gene 177465 Entrez gene
179954 Entrez gene
SwissProt Q18144 EMBL-EBI
O62323 EMBL-EBI
WormBase CE31313 Wormbase
CE29435 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03180 Hypothetical protein C25A8.2 [Caenorhabditis elegans] ref|NP_501083.2| C25A8.2 [Caenorhabditis elegans] 4.0E-40
blast CAB01436 Hypothetical protein R02D5.7 [Caenorhabditis elegans] ref|NP_506592.1| R02D5.7 [Caenorhabditis elegans] 2.0E-37
blast CAB01436 Hypothetical protein R02D5.7 [Caenorhabditis elegans] ref|NP_506592.1| R02D5.7 [Caenorhabditis elegans] 2.0E-34
blast AAB03180 Hypothetical protein C25A8.2 [Caenorhabditis elegans] ref|NP_501083.2| C25A8.2 [Caenorhabditis elegans] 3.0E-33
blast AAB03180 Hypothetical protein C25A8.2 [Caenorhabditis elegans] ref|NP_501083.2| C25A8.2 [Caenorhabditis elegans] 2.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501083.2 1 10-32
NP_506592.1 1 10-32
C25A8.2 1 10-32
R02D5.7 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:178010_S_AT
tgctctccagaaattcgcaacttaaagatcaattggattaaagtggataaaaaaaatatt
cgcaaaacgccgaaaattggcagccgaattctcccccttttctgtcatgtttcctgcaaa
aaaatatatattttctttcagttcgatgtctcttcgtcgtgccaatttgttgtccaactc
ctccaattttgcaatgtttttattcttctcgcggttatggccatcacctcatgcggaaag
aaaaaagcatcaaatagcaaggaaatgagcaaaaagagtatgcaaaccggccctggaaca
gccaccgaagccggagctgcttcttcgttagcaccggtcgacccgacaaagctcgccaca
cctggaccagcggcgccgaaaaaggaagaagctccgcctccagagaagcccaagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTCCAGAAATTCGCAACTTAA 148 581 34 Antisense
ATTCGCAACTTAAAGATCAATTGGA 400 9 46 Antisense
TCGCAAAACGCCGAAAATTGGCAGC 378 599 93 Antisense
CTTTTCTGTCATGTTTCCTGCAAAA 206 223 130 Antisense
TTCTGTCATGTTTCCTGCAAAAAAA 234 695 133 Antisense
TATATATTTTCTTTCAGTTCGATGT 652 661 158 Antisense
TCTTCGTCGTGCCAATTTGTTGTCC 521 617 184 Antisense
TCGTGCCAATTTGTTGTCCAACTCC 142 603 190 Antisense
TTATTCTTCTCGCGGTTATGGCCAT 416 679 233 Antisense
CCTGGACCAGCGGCGCCGAAAAAGG 131 265 394 Antisense
TCCGCCTCCAGAGAAGCCCAAGAAA 638 595 426 Antisense
Sequence Source Affymetrix Proprietary Database