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[178008_at]

Description F58G1.9 /REP_DB=WormBase Gene ID /WP=CE17929 /TR=O62273 /GB=CAB04522.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 15      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 39.2
(-0.8)
A 		24
(-3)
A 		35.2
(-1.4)
A 		65.8
(3)
A 		42
B 44.6
(3)
A 		31
(-1.4)
A 		28.7
(-2.1)
A 		25.9
(-3)
A 		19
C 59.9
(2.4)
A 		8
(-3)
A 		27.6
(-1)
A 		65.8
(3)
A 		58
avr 47.9
(2.1) 		21
(-3) 		30.5
(-1.2) 		52.5
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 73
(3)
A 		36.4
(-1.4)
P 		40.6
(-0.9)
P 		22.7
(-3)
A 		55.2
(0.9)
A 		67.2
(2.3)
P 		50
B 74.8
(1.6)
A 		31.2
(-1.4)
A 		7.8
(-3)
A 		32.8
(-1.3)
A 		55.7
(0.3)
P 		95.2
(3)
P 		87
C 45.3
(-1.2)
A 		31.8
(-3)
A 		42.4
(-1.6)
A 		75.9
(3)
A 		38.2
(-2.1)
A 		66.3
(1.7)
P 		44
avr 64.4
(1.5) 		33.1
(-2.6) 		30.3
(-3) 		43.8
(-1.2) 		49.7
(-0.5) 		76.2
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.3
(3)
A 		5.2
(-3)
A 		9.2
(-0.4)
A 		9.6
(-0.1)
A 		9
B 14.2
(3)
A 		7.7
(-1.5)
A 		6.6
(-2.2)
A 		5.5
(-3)
A 		9
C 19.8
(3)
A 		2.3
(-3)
A 		9.6
(-0.5)
A 		11.1
(0)
A 		18
avr 16.1
(3) 		5.1
(-3) 		8.5
(-1.1) 		8.7
(-1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.5
(1.3)
A 		12.9
(0.9)
P 		8.8
(-1.3)
P 		5.8
(-3)
A 		16.6
(3)
A 		16.4
(2.9)
P 		11
B 26
(1.3)
A 		10.4
(-1.5)
A 		1.9
(-3)
A 		8.7
(-1.8)
A 		22.6
(0.7)
P 		35.5
(3)
P 		34
C 16.8
(0.4)
A 		9.7
(-3)
A 		10.8
(-2.5)
A 		15.3
(-0.3)
A 		12.4
(-1.7)
A 		22.2
(3)
P 		13
avr 18.8
(1) 		11
(-1.7) 		7.2
(-3) 		9.9
(-2.1) 		17.2
(0.4) 		24.7
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2905
Sequence Type Exemplar sequence
Representative Public ID F58G1.9 NCBI
Target Description F58G1.9 /REP_DB=WormBase Gene ID /WP=CE17929 /TR=O62273 /GB=CAB04522.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064351 NCBI Caenorhabditis elegans F58G1.9 (F58G1.9) mRNA, complete cds. 11/11 None
SNAP00000003687 ENSEMBL cdna:SNAP chromosome:CEL140:II:12924781:12925138:1 11/11 None
GENEFINDER00000003701 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12924183:12925138:1 11/11 None
F58G1.9 ENSEMBL cdna:known chromosome:CEL140:II:12924781:12925138:1 gene:F58G1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12924777-12925135(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G1.9
Entrez Gene 186542 Entrez gene
SwissProt O62273 EMBL-EBI
WormBase CE17929 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04522 Hypothetical protein F58G1.9 [Caenorhabditis elegans] ref|NP_496752.1| F58G1.9 [Caenorhabditis elegans] 5.0E-44
Sequence
Target Sequence 
>C. ELEGANS:178008_AT
gattgcttcccgcgatgaagacaccaagtgctctatgctggtagcaatattgtctacgtt
ggattcacttttgcactcagaaaccgctctatccgtattcgactgctgcattaatcttcg
aaatattgggctattgtatgatatgaaaattcaggattatcaatacattttcgatacaat
tcttgactacttcattattggtcaagctgccgttgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGCTTCCCGCGATGAAGACACC 160 431 15 Antisense
GAAGACACCAAGTGCTCTATGCTGG 321 339 31 Antisense
CACCAAGTGCTCTATGCTGGTAGCA 55 203 36 Antisense
GCTGGTAGCAATATTGTCTACGTTG 394 295 51 Antisense
GTCTACGTTGGATTCACTTTTGCAC 331 469 66 Antisense
ACTTTTGCACTCAGAAACCGCTCTA 533 101 81 Antisense
ATCCGTATTCGACTGCTGCATTAAT 282 39 105 Antisense
GACTGCTGCATTAATCTTCGAAATA 577 375 115 Antisense
ATACATTTTCGATACAATTCTTGAC 6 25 177 Antisense
AATTCTTGACTACTTCATTATTGGT 127 177 192 Antisense
TTATTGGTCAAGCTGCCGTTGCCAC 355 671 209 Antisense
Sequence Source Affymetrix Proprietary Database