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[178007_at]

Description K01A6.5 /REP_DB=WormBase Gene ID /WP=CE06038 /TR=Q21078 /GB=CAA92968.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 51.8
(1)
A 		14.5
(-3)
A 		28.2
(-1.5)
A 		69.9
(3)
A 		55
B 29
(-3)
A 		71.1
(1)
A 		38.3
(-2.1)
A 		92.8
(3)
A 		64
C 27.5
(-3)
A 		32.2
(-2.5)
A 		49.4
(-0.7)
A 		84.9
(3)
A 		57
avr 36.1
(-3) 		39.3
(-2.6) 		38.6
(-2.7) 		82.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 39.2
(-0.9)
A 		43.5
(-0.5)
A 		46.1
(-0.3)
A 		16.1
(-3)
A 		82.5
(3)
A 		49.3
(-0)
A 		66
B 52.2
(3)
A 		49.1
(2.6)
A 		45
(2)
A 		47
(2.2)
A 		10.8
(-3)
A 		36.4
(0.7)
A 		41
C 47
(0)
A 		61
(1.6)
A 		19.7
(-3)
A 		72.1
(2.8)
A 		73.7
(3)
A 		62.7
(1.8)
A 		54
avr 46.1
(-0.1) 		51.2
(1.6) 		36.9
(-3) 		45.1
(-0.4) 		55.7
(3) 		49.5
(1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.9
(3)
A 		3.2
(-3)
A 		7.4
(-1.4)
A 		10.2
(-0.3)
A 		16
B 9.2
(-2.8)
A 		17.6
(1.8)
A 		8.9
(-3)
A 		19.8
(3)
A 		11
C 9.1
(-3)
A 		9.3
(-2.9)
A 		17.2
(3)
A 		14.3
(0.9)
A 		8
avr 12.4
(0) 		10
(-3) 		11.2
(-1.5) 		14.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 7.2
(-2.1)
A 		15.5
(0.3)
A 		10
(-1.3)
A 		4.1
(-3)
A 		24.9
(3)
A 		12
(-0.7)
A 		21
B 18.2
(3)
A 		16.4
(2.2)
A 		10.9
(-0.2)
A 		12.4
(0.5)
A 		4.4
(-3)
A 		13.6
(1)
A 		14
C 17.4
(1)
A 		18.6
(1.3)
A 		5
(-3)
A 		14.5
(0)
A 		23.8
(3)
A 		21
(2.1)
A 		19
avr 14.3
(0.8) 		16.8
(2.4) 		8.6
(-3) 		10.3
(-1.9) 		17.7
(3) 		15.5
(1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10154
Sequence Type Exemplar sequence
Representative Public ID K01A6.5 NCBI
Target Description K01A6.5 /REP_DB=WormBase Gene ID /WP=CE06038 /TR=Q21078 /GB=CAA92968.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069823(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069823 NCBI Caenorhabditis elegans K01A6.5 (K01A6.5) mRNA, complete cds. 10/11 None
SNAP00000040618 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11742887:11743674:1 10/11 None
GENEFINDER00000040620 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11742887:11743578:1 10/11 None
K01A6.5 ENSEMBL cdna:known chromosome:CEL140:IV:11742887:11743605:1 gene:K01A6.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11740372-11743611(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A6.5
Entrez Gene 186824 Entrez gene
SwissProt Q21078 EMBL-EBI
WormBase CE37388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92968 Hypothetical protein K01A6.5 [Caenorhabditis elegans] ref|NP_502224.2| K01A6.5 [Caenorhabditis elegans] 2.0E-80
blast CAA92968 Hypothetical protein K01A6.5 [Caenorhabditis elegans] ref|NP_502224.2| K01A6.5 [Caenorhabditis elegans] 2.0E-76
blast CAE74537 Hypothetical protein CBG22294 [Caenorhabditis briggsae] 1.0E-33
blast CAE74537 Hypothetical protein CBG22294 [Caenorhabditis briggsae] 2.0E-32
blast CAA94826 Hypothetical protein F46B6.10 [Caenorhabditis elegans] ref|NP_505529.1| F46B6.10 [Caenorhabditis elegans] 5.0E-32
blast CAA94826 Hypothetical protein F46B6.10 [Caenorhabditis elegans] ref|NP_505529.1| F46B6.10 [Caenorhabditis elegans] 6.0E-32
Sequence
Target Sequence 
>C. ELEGANS:178007_AT
tccacgtgagtgcttccatatatttgtttattggcgtgtgttgtaccaacgtataaagtt
agaaaatgcacaaaaaaatttcagggatgacgctttcaaagaaatggcgaaacgtttaac
gaaaaaggatagacctgagaaaactggagattcaattgttggagaggacgacgaaaatcc
tcttgcacaataccagatgcctgaacgaccagtcgttccaccaaatcaggatggtgcaac
attggagaacattgttgaaatggaaaagaagcctgtctcaaaacaaccaacaattcgagc
tttaactccatcaggtggtgccaagactgcacagccgatttcagttgctcagccgcctcc
tgttcaacagaagtcccagaaatccattatcccgaagaaagataaaactataaccactga
taagacgcaatcggatccacgtagcagagagattgagagcactcagcatgtgaccaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACGTGAGTGCTTCCATATATTT 669 587 984 Antisense
CGACGAAAATCCTCTTGCACAATAC 528 251 1152 Antisense
ACCAGTCGTTCCACCAAATCAGGAT 558 85 1191 Antisense
GAAGCCTGTCTCAAAACAACCAACA 27 345 1251 Antisense
ACAACCAACAATTCGAGCTTTAACT 400 113 1266 Antisense
GCTTTAACTCCATCAGGTGGTGCCA 311 303 1282 Antisense
GGTGGTGCCAAGACTGCACAGCCGA 138 499 1297 Antisense
GCCGCCTCCTGTTCAACAGAAGTCC 538 285 1335 Antisense
AGAAGTCCCAGAAATCCATTATCCC 54 75 1352 Antisense
GACGCAATCGGATCCACGTAGCAGA 452 379 1407 Antisense
GAGAGCACTCAGCATGTGACCAATG 308 393 1438 Antisense
Sequence Source Affymetrix Proprietary Database