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[178005_at]

Description C27C7.5 /REP_DB=WormBase Gene ID /WP=CE24813 /TR=Q9XVD0 /GB=CAB03925.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 5.5
(-3)
A 		14
(-1.9)
A 		49.9
(3)
A 		9.7
(-2.4)
A 		44
B 15.4
(-0.4)
A 		22.5
(1)
A 		32.7
(3)
A 		2.1
(-3)
A 		31
C 42.7
(3)
A 		18.6
(-1.6)
A 		11.4
(-3)
A 		28.2
(0.2)
A 		31
avr 21.2
(-0.4) 		18.4
(-1.3) 		31.3
(3) 		13.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 29.5
(2.5)
A 		9.2
(-1.8)
A 		3.5
(-3)
A 		17.3
(-0.1)
A 		11.6
(-1.3)
A 		31.9
(3)
A 		28
B 4.3
(-2.1)
A 		9
(3)
A 		7.9
(1.8)
A 		8
(1.9)
A 		3.5
(-3)
A 		4.3
(-2.1)
A 		6
C 11.1
(-0.1)
A 		8.6
(-1)
A 		4.6
(-2.4)
A 		3
(-3)
A 		3.7
(-2.7)
A 		19.5
(3)
A 		17
avr 15
(1.4) 		8.9
(-1.4) 		5.3
(-3) 		9.4
(-1.2) 		6.3
(-2.5) 		18.6
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2
(-2.7)
A 		3
(-2.2)
A 		13
(3)
A 		1.4
(-3)
A 		12
B 4.9
(0.8)
A 		5.6
(1.3)
A 		7.6
(3)
A 		0.4
(-3)
A 		7
C 14.1
(3)
A 		5.3
(-2.2)
A 		4
(-3)
A 		4.7
(-2.6)
A 		10
avr 7
(1.8) 		4.6
(-0.6) 		8.2
(3) 		2.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.4
(0.9)
A 		3.3
(-0.9)
A 		0.8
(-3)
A 		4.4
(0.1)
A 		3.5
(-0.7)
A 		7.8
(3)
A 		7
B 1.5
(-2.6)
A 		3
(3)
A 		1.9
(-1.1)
A 		2.1
(-0.4)
A 		1.4
(-3)
A 		1.6
(-2.3)
A 		2
C 4.1
(0.6)
A 		2.6
(-1)
A 		1.2
(-2.4)
A 		0.6
(-3)
A 		1.2
(-2.4)
A 		6.5
(3)
A 		6
avr 3.7
(0.6) 		3
(-0.5) 		1.3
(-3) 		2.4
(-1.4) 		2
(-2) 		5.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2315
Sequence Type Exemplar sequence
Representative Public ID C27C7.5 NCBI
Target Description C27C7.5 /REP_DB=WormBase Gene ID /WP=CE24813 /TR=Q9XVD0 /GB=CAB03925.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060517 NCBI Caenorhabditis elegans C27C7.5 (C27C7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000039067 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11432155:11434176:-1 11/11 None
C27C7.5 ENSEMBL cdna:known chromosome:CEL140:I:11432155:11434176:-1 gene:C27C7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039060 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11432085-11434107(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27C7.5
Entrez Gene 182958 Entrez gene
SwissProt Q9XVD0 EMBL-EBI
WormBase CE24813 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03925 Hypothetical protein C27C7.5 [Caenorhabditis elegans] ref|NP_492918.1| C27C7.5 [Caenorhabditis elegans] 1.0E-165
blast CAB04668 Hypothetical protein T02G6.7 [Caenorhabditis elegans] ref|NP_493005.1| T02G6.7 [Caenorhabditis elegans] 4.0E-49
blast CAE64495 Hypothetical protein CBG09221 [Caenorhabditis briggsae] 8.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 8.6E-6
Sequence
Target Sequence 
>C. ELEGANS:178005_AT
aacaattccacggcagatactacctgccctacaagtatttcaggctcttttccatcgaaa
atgcggagcatgtgggaaactttcaccaattcaaattataacatcacttttaccggtgat
ctatggaagttttcttatcaagataaagttacgcaggctgggagcaactacgccctaccg
tacactattatatttcccgacgggcattttaaactgaaacagagtattgtgttaattggt
tatccatcagaacagaggtggttcctcaatatagaatcatcaattggagaagtcctgttt
catttcaacccgagaccagaagtcaatgaggttgtccggtcaactcatcgaaacggagtt
tgggaaatgtatgagagtagtggaggatatccatttacagctgggcaacaattcaatttg
acaattaccaatagcatcagtgatctacaaatgtacattaatcaagtatggtttgctgat
tatagacatagaactccgaatcctgctgaagactatgtgaagttgtgggttcaggtggca
gtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATTCCACGGCAGATACTACCT 362 133 280 Antisense
ACTACCTGCCCTACAAGTATTTCAG 455 101 298 Antisense
TATTTCAGGCTCTTTTCCATCGAAA 219 663 315 Antisense
TACGCAGGCTGGGAGCAACTACGCC 478 649 429 Antisense
ACGCCCTACCGTACACTATTATATT 26 91 449 Antisense
CACTATTATATTTCCCGACGGGCAT 167 197 462 Antisense
GTCCTGTTTCATTTCAACCCGAGAC 179 477 571 Antisense
TGAGGTTGTCCGGTCAACTCATCGA 645 567 606 Antisense
TATCCATTTACAGCTGGGCAACAAT 203 657 667 Antisense
AGAACTCCGAATCCTGCTGAAGACT 54 73 769 Antisense
GAAGTTGTGGGTTCAGGTGGCAGTG 603 335 798 Antisense
Sequence Source Affymetrix Proprietary Database