[Home] | [Total List]

[178004_at]

Description F53A2.9 /REP_DB=WormBase Gene ID /WP=CE16101 /TR=O45554 /GB=CAB04457.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 64      4grp_high_8_8 > 12      6grp_total > 64      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1020
1 2 3 4 range
A 593.8
(-1.2)
P 		473.3
(-2)
P 		340.4
(-3)
A 		1166.2
(3)
P 		826
B 631.4
(-0.6)
P 		340.1
(-2.3)
A 		229.2
(-3)
M 		1249.1
(3)
P 		1020
C 668
(-0.5)
P 		347.7
(-2.6)
M 		279.6
(-3)
P 		1221.2
(3)
P 		942
avr 631.1
(-0.8) 		387
(-2.3) 		283.1
(-3) 		1212.2
(3) 		929

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 744
1 2 3 4 5 6 range
A 471.2
(0.1)
P 		219
(-3)
P 		712.6
(3)
P 		284
(-2.2)
P 		341.3
(-1.5)
P 		313.8
(-1.8)
P 		494
B 524.7
(0.3)
P 		482.7
(-0.1)
P 		854.6
(3)
P 		816.8
(2.7)
P 		125.4
(-3)
P 		742.4
(2.1)
P 		729
C 110.6
(-3)
A 		391
(-0.2)
P 		531.3
(1.2)
P 		705.9
(3)
P 		137.7
(-2.7)
A 		673.9
(2.7)
P 		595
avr 368.8
(-1) 		364.2
(-1) 		699.5
(3) 		602.2
(1.8) 		201.5
(-3) 		576.7
(1.5) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 216.2
(3)
P 		102.7
(-2.4)
P 		89
(-3)
A 		170.7
(0.9)
P 		127
B 201.3
(1.2)
P 		84
(-2.1)
A 		53.1
(-3)
M 		266.2
(3)
P 		213
C 221.1
(3)
P 		100
(-2.9)
M 		97.4
(-3)
P 		205.9
(2.3)
P 		124
avr 212.9
(2.9) 		95.6
(-2.3) 		79.8
(-3) 		214.3
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 86.9
(-1.9)
P 		77.9
(-2.6)
P 		155.2
(3)
P 		72
(-3)
P 		103
(-0.8)
P 		76.4
(-2.7)
P 		83
B 182.6
(0.5)
P 		160.7
(-0.1)
P 		207.5
(1.2)
P 		216.3
(1.4)
P 		51
(-3)
P 		276.8
(3)
P 		226
C 41
(-3)
A 		119.3
(-0.5)
P 		135.2
(0.1)
P 		142
(0.3)
P 		44.6
(-2.9)
A 		225.6
(3)
P 		185
avr 103.5
(-1.2) 		119.3
(-0.5) 		166
(1.7) 		143.4
(0.7) 		66.2
(-3) 		192.9
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7810
Sequence Type Exemplar sequence
Representative Public ID F53A2.9 NCBI
Target Description F53A2.9 /REP_DB=WormBase Gene ID /WP=CE16101 /TR=O45554 /GB=CAB04457.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067353 NCBI Caenorhabditis elegans F53A2.9 (F53A2.9) mRNA, complete cds. 11/11 None
SNAP00000020113 ENSEMBL cdna:SNAP chromosome:CEL140:III:13352062:13358793:-1 10/11 None
GENEFINDER00000020124 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13355932:13356969:-1 11/11 None
F53A2.9 ENSEMBL cdna:known chromosome:CEL140:III:13356339:13358793:-1 gene:F53A2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13356334-13358789(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A2.9
Entrez Gene 186140 Entrez gene
SwissProt O45554 EMBL-EBI
WormBase CE16101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04457 Hypothetical protein F53A2.9 [Caenorhabditis elegans] ref|NP_499754.1| F53A2.9 [Caenorhabditis elegans] 0.0
blast CAE56891 Hypothetical protein CBG24731 [Caenorhabditis briggsae] 1.0E-110
blast CAE56891 Hypothetical protein CBG24731 [Caenorhabditis briggsae] 2.0E-99
blast CAB04457 Hypothetical protein F53A2.9 [Caenorhabditis elegans] ref|NP_499754.1| F53A2.9 [Caenorhabditis elegans] 2.0E-93
blast CAE56891 Hypothetical protein CBG24731 [Caenorhabditis briggsae] 4.0E-51
Sequence
Target Sequence 
>C. ELEGANS:178004_AT
cagagtgagcactcatttcacaagaaaaacgttgaattttgtgaactcacctatgatcaa
tattgtggcaaggcaggtaccatcagaagctgtaaattcttttttaaaacgctggtgtcg
tggagagatcattgaagattttcaatatcttcatctaatggaaacaactcaatggccatc
ccaacaaatgcatatgatggatgcactttctggattacggtatcagatagttgatttgaa
gactgatgtcaaattgcgtatcctggaaaaacaaaaggaatttccaaaacctgcgcaaat
ttttcaaataactggaccacgccccggattctgtgctcattttggaaatcaattcatctt
tgaaattccgaagaccgaagatattcaacacatactcgtcaatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGTGAGCACTCATTTCACAAGA 97 207 789 Antisense
GTGAACTCACCTATGATCAATATTG 409 481 829 Antisense
GGCAAGGCAGGTACCATCAGAAGCT 176 533 855 Antisense
CGCTGGTGTCGTGGAGAGATCATTG 156 255 898 Antisense
GGAAACAACTCAATGGCCATCCCAA 606 527 948 Antisense
ATGGCCATCCCAACAAATGCATATG 558 53 960 Antisense
GGATGCACTTTCTGGATTACGGTAT 165 511 987 Antisense
ATGTCAAATTGCGTATCCTGGAAAA 493 47 1034 Antisense
TTTCAAATAACTGGACCACGCCCCG 603 661 1090 Antisense
CCCGGATTCTGTGCTCATTTTGGAA 696 259 1111 Antisense
TATTCAACACATACTCGTCAATCCT 632 663 1170 Antisense
Sequence Source Affymetrix Proprietary Database