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[178003_at]

Description C35D6.3 /REP_DB=WormBase Gene ID /WP=CE15682 /TR=O45288 /GB=CAB05146.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.2
(-3)
A 		13.7
(-1.2)
A 		12.3
(-1.8)
A 		24.3
(3)
A 		15
B 7.8
(-0.3)
A 		9.8
(3)
A 		6.2
(-3)
A 		7.3
(-1.2)
A 		4
C 6.7
(-3)
A 		8.3
(-2.4)
A 		7.4
(-2.7)
A 		22.3
(3)
A 		16
avr 7.9
(-3) 		10.6
(-1.4) 		8.6
(-2.6) 		18
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11.5
(1.6)
A 		11.4
(1.5)
A 		7
(-1.4)
A 		13.6
(3)
A 		11.4
(1.5)
A 		4.6
(-3)
A 		9
B 6
(-2.2)
A 		10.4
(3)
A 		5.3
(-3)
A 		9.1
(1.5)
A 		6
(-2.2)
A 		6.9
(-1.1)
A 		5
C 3.3
(-2.4)
A 		8.2
(3)
A 		6.8
(1.4)
A 		7.4
(2.1)
A 		5.5
(0)
A 		2.8
(-3)
A 		5
avr 6.9
(-0.6) 		10
(3) 		6.4
(-1.2) 		10
(3) 		7.6
(0.2) 		4.8
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 3.4
(1)
A 		3
(-3)
A 		3.2
(-1)
A 		3.6
(3)
A 		1
B 2.5
(3)
A 		2.4
(2.5)
A 		1.4
(-3)
A 		1.6
(-1.9)
A 		1
C 2.2
(-3)
A 		2.4
(-2.3)
A 		2.6
(-1.5)
A 		3.8
(3)
A 		2
avr 2.7
(0) 		2.6
(-1) 		2.4
(-3) 		3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.1
(-1)
A 		4.1
(3)
A 		1.5
(-2.2)
A 		3.5
(1.8)
A 		3.4
(1.6)
A 		1.1
(-3)
A 		3
B 2.1
(-0.8)
A 		3.5
(3)
A 		1.3
(-3)
A 		2.4
(-0)
A 		2.4
(-0)
A 		2.6
(0.5)
A 		2
C 1.2
(-1.9)
A 		2.5
(3)
A 		1.7
(-0)
A 		1.5
(-0.8)
A 		1.8
(0.4)
A 		0.9
(-3)
A 		2
avr 1.8
(-2.1) 		3.4
(3) 		1.5
(-3) 		2.5
(0.2) 		2.5
(0.2) 		1.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9438
Sequence Type Exemplar sequence
Representative Public ID C35D6.3 NCBI
Target Description C35D6.3 /REP_DB=WormBase Gene ID /WP=CE15682 /TR=O45288 /GB=CAB05146.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070547 NCBI Caenorhabditis elegans C35D6.3 (C35D6.3) mRNA, complete cds. 11/11 None
SNAP00000023352 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16347059:16348095:1 11/11 None
GENEFINDER00000023356 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16347129:16347391:1 11/11 None
C35D6.3 ENSEMBL cdna:known chromosome:CEL140:IV:16347129:16347391:1 gene:C35D6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16347134-16347397(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D6.3
Entrez Gene 183234 Entrez gene
SwissProt O45288 EMBL-EBI
WormBase CE15682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05146 Hypothetical protein C35D6.3 [Caenorhabditis elegans] ref|NP_502948.1| C35D6.3 [Caenorhabditis elegans] 2.0E-33
blast CAC14419 Hypothetical protein Y71A12B.3 [Caenorhabditis elegans] emb|CAB81987.1| Hypothetical protein Y71A12B.2 [Caenorhabditis elegans] ref|NP_493428.1| Y71A12B.3 [Caenorhabditis elegans] ref|NP_493427.1| Y71A12B.2 [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:178003_AT
gtggaccaaggaatcctgcgtctccgccaaaaagatgccagcctggagttcggaccgcct
cgccgacgtacaactgtggtcaactggtaccaggagcgtcatgggactcgactcaccaaa
cccgaatggccactggcattcgtttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGACCAAGGAATCCTGCGTCTCC 192 491 16 Antisense
ATCCTGCGTCTCCGCCAAAAAGATG 29 39 28 Antisense
TGCGTCTCCGCCAAAAAGATGCCAG 676 581 32 Antisense
AAGATGCCAGCCTGGAGTTCGGACC 547 155 47 Antisense
CTCGCCGACGTACAACTGTGGTCAA 548 233 74 Antisense
GACGTACAACTGTGGTCAACTGGTA 455 375 80 Antisense
GTGGTCAACTGGTACCAGGAGCGTC 190 487 91 Antisense
GGTACCAGGAGCGTCATGGGACTCG 503 503 101 Antisense
ACCAGGAGCGTCATGGGACTCGACT 32 87 104 Antisense
CAAACCCGAATGGCCACTGGCATTC 550 191 132 Antisense
GAATGGCCACTGGCATTCGTTTGCC 551 331 139 Antisense
Sequence Source Affymetrix Proprietary Database