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[178001_at]

Description F17B5.4 /REP_DB=WormBase Gene ID /WP=CE15868 /TR=O45376 /GB=CAB02972.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 42      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 33.2
(-3)
A 		115.3
(3)
P 		82
(0.6)
P 		42.8
(-2.3)
A 		82
B 56.2
(-3)
A 		125.5
(3)
P 		102.3
(1)
P 		62.7
(-2.4)
A 		69
C 50
(-3)
A 		168
(3)
P 		76.3
(-1.7)
P 		52.2
(-2.9)
A 		118
avr 46.5
(-3) 		136.3
(3) 		86.9
(-0.3) 		52.6
(-2.6) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 37.8
(-3)
A 		53.1
(3)
M 		47.6
(0.8)
P 		50.3
(1.9)
A 		43.2
(-0.9)
A 		38.7
(-2.6)
A 		15
B 54.6
(1.1)
P 		71
(3)
A 		58.6
(1.6)
A 		19.2
(-3)
A 		44.1
(-0.1)
A 		50
(0.6)
P 		52
C 38.9
(-2.4)
A 		94.1
(3)
P 		66.7
(0.3)
A 		32.5
(-3)
A 		45.9
(-1.7)
A 		51.1
(-1.2)
P 		62
avr 43.8
(-1.5) 		72.7
(3) 		57.6
(0.7) 		34
(-3) 		44.4
(-1.4) 		46.6
(-1) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 12.1
(-1.1)
A 		25
(3)
P 		21.4
(1.8)
P 		6.3
(-3)
A 		19
B 17.9
(-1.5)
A 		31
(3)
P 		23.7
(0.5)
P 		13.4
(-3)
A 		18
C 16.5
(-1.8)
A 		48.3
(3)
P 		26.6
(-0.3)
P 		8.8
(-3)
A 		40
avr 15.5
(-1.6) 		34.8
(3) 		23.9
(0.4) 		9.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7
(-3)
A 		18.9
(3)
M 		10.4
(-1.3)
P 		12.7
(-0.1)
A 		13
(0)
A 		9.4
(-1.8)
A 		12
B 19
(1.5)
P 		23.6
(3)
A 		14.2
(-0)
A 		5.1
(-3)
A 		17.9
(1.2)
A 		18.6
(1.4)
P 		19
C 14.4
(-0.9)
A 		28.7
(3)
P 		17
(-0.2)
A 		6.5
(-3)
A 		14.8
(-0.8)
A 		17.1
(-0.1)
P 		22
avr 13.5
(-0.9) 		23.7
(3) 		13.9
(-0.8) 		8.1
(-3) 		15.2
(-0.3) 		15
(-0.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2310
Sequence Type Exemplar sequence
Representative Public ID F17B5.4 NCBI
Target Description F17B5.4 /REP_DB=WormBase Gene ID /WP=CE15868 /TR=O45376 /GB=CAB02972.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026222 NCBI Caenorhabditis elegans F17B5.6 (F17B5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000002460 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13207478:13212344:1 9/11 None
SNAP00000002457 ENSEMBL cdna:SNAP chromosome:CEL140:I:13210798:13212344:1 9/11 None
F17B5.6 ENSEMBL cdna:known chromosome:CEL140:I:13209928:13212344:1 gene:F17B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13207408-13212275(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17B5.6
Entrez Gene 3564876 Entrez gene
SwissProt Q5FC46 EMBL-EBI
WormBase CE37896 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAI46608 Hypothetical protein F17B5.6 [Caenorhabditis elegans] ref|NP_001021393.1| F17B5.6 [Caenorhabditis elegans] 0.0
blast CAI46608 Hypothetical protein F17B5.6 [Caenorhabditis elegans] ref|NP_001021393.1| F17B5.6 [Caenorhabditis elegans] 1.0E-161
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 1.0E-110
blast CAB02972 Hypothetical protein F17B5.4 [Caenorhabditis elegans] ref|NP_493311.2| F17B5.4 [Caenorhabditis elegans] 1.0E-109
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 1.0E-108
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 6.0E-6
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 3.3E-118
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 6.0E-6
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 6.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021393.1 1 12-34
F17B5.6 1 12-34
GENEFINDER00000002460 2 5-22,303-325
Sequence
Target Sequence 
>C. ELEGANS:178001_AT
aatattttgcacccatcgaatctaccatcaggcagttgttgaagccaaccccggaagaac
tagccagaatttcaatgaagaatcaggaggaaggtcgtcatgggtaccacctaatttata
ttcaacaaaacttaaaatctttaatgtttagtacctgcgtgcacgttcgtcgtggagact
ttgtcgcagactcgcagcacactgggacagacgaaacatttactatcaaggcaatcgagt
atttgttcactaaatacagtggaactatttacatgatcagcaacgatccagactgggtgg
gagagcatattgtgaaccatgtcgcttttcgaaatgatatgaaagtgctaagaactccca
acaatcgagccattgatgatctctatttttcgcaggtttactgtgattctgttctgataa
ctgccccctcttccacgtttggctggtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATTTTGCACCCATCGAATCTAC 82 175 1301 Antisense
TGAAGCCAACCCCGGAAGAACTAGC 580 571 1340 Antisense
GAGGAAGGTCGTCATGGGTACCACC 446 405 1387 Antisense
AATGTTTAGTACCTGCGTGCACGTT 132 157 1443 Antisense
GTCGTGGAGACTTTGTCGCAGACTC 358 473 1469 Antisense
ACTCGCAGCACACTGGGACAGACGA 671 97 1490 Antisense
ATTGTGAACCATGTCGCTTTTCGAA 454 3 1609 Antisense
AAGAACTCCCAACAATCGAGCCATT 339 151 1650 Antisense
GATCTCTATTTTTCGCAGGTTTACT 31 419 1678 Antisense
GTGATTCTGTTCTGATAACTGCCCC 674 483 1703 Antisense
CCCTCTTCCACGTTTGGCTGGTGGA 626 257 1726 Antisense
Sequence Source Affymetrix Proprietary Database