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[178000_at]

Description T27E7.2 /REP_DB=WormBase Gene ID /WP=CE16506 /TR=O45857 /GB=CAB05289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 12      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 20.3
(-3)
A 		26
(-2.4)
A 		21.8
(-2.8)
A 		75.1
(3)
P 		55
B 35.4
(3)
A 		2.5
(-3)
A 		3.8
(-2.8)
A 		29.8
(2)
A 		33
C 43.5
(-0.7)
A 		13
(-2.4)
A 		2.3
(-3)
A 		110
(3)
P 		108
avr 33.1
(-0.7) 		13.8
(-2.6) 		9.3
(-3) 		71.6
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 4.5
(-3)
A 		7.1
(-2.4)
A 		24.2
(1.4)
A 		29.8
(2.7)
A 		31.1
(3)
A 		10.3
(-1.7)
A 		27
B 5
(-2.3)
A 		4
(-2.6)
A 		2.8
(-3)
A 		23
(3)
A 		3.8
(-2.7)
A 		7.5
(-1.6)
A 		20
C 1.1
(-3)
A 		45.3
(3)
A 		20.6
(-0.4)
A 		15.7
(-1)
A 		20.1
(-0.4)
A 		7.7
(-2.1)
A 		44
avr 3.5
(-3) 		18.8
(1.8) 		15.9
(0.9) 		22.8
(3) 		18.3
(1.6) 		8.5
(-1.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.4
(-1)
A 		5.6
(-3)
A 		5.7
(-2.9)
A 		11
(3)
P 		5
B 11.3
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		6.3
(0.2)
A 		11
C 14.4
(1.6)
A 		3.7
(-2)
A 		0.8
(-3)
A 		18.5
(3)
P 		18
avr 11
(2.4) 		3.3
(-2.5) 		2.5
(-3) 		11.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.5
(-1.8)
A 		5.3
(0.1)
A 		7.6
(1.7)
A 		9.4
(3)
A 		2.5
(-1.8)
A 		9
B 1.8
(-1.8)
A 		1.3
(-2.3)
A 		0.7
(-3)
A 		6.1
(3)
A 		1.6
(-2)
A 		2.8
(-0.7)
A 		5
C 0.4
(-3)
A 		13.8
(3)
A 		5.2
(-0.9)
A 		3.2
(-1.7)
A 		6.5
(-0.3)
A 		2.6
(-2)
A 		13
avr 1
(-3) 		5.9
(3) 		3.7
(0.3) 		5.6
(2.6) 		5.8
(2.9) 		2.6
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10298
Sequence Type Exemplar sequence
Representative Public ID T27E7.2 NCBI
Target Description T27E7.2 /REP_DB=WormBase Gene ID /WP=CE16506 /TR=O45857 /GB=CAB05289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028233 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-63) (srh-63) mRNA, complete cds. 11/11 None
T27E7.8 ENSEMBL cdna:known chromosome:CEL140:IV:14523835:14525164:1 gene:T27E7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14522436-14525170(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-63
Ensembl T27E7.8
Entrez Gene 3565760 Entrez gene
SwissProt Q7YXA9 EMBL-EBI
WormBase CE34501 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE11307 Hypothetical protein T27E7.8 [Caenorhabditis elegans] ref|NP_001023404.1| Serpentine Receptor, class H family member (srh-63) [Caenorhabditis elegans] 1.0E-175
blast T25362 hypothetical protein T27E7.2 - Caenorhabditis elegans 1.0E-175
blast AAG45575 Serpentine receptor, class h protein 62 [Caenorhabditis elegans] ref|NP_503190.1| Serpentine Receptor, class H family member (srh-62) [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-107
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023404.1 7 31-50,70-92,107-129,150-172,216-238,255-277,292-314
T27E7.8 7 31-50,70-92,107-129,150-172,216-238,255-277,292-314
Sequence
Target Sequence 
>C. ELEGANS:178000_AT
catttctagttttaacaccgccatttttcttcctaccagatcaagaagaggctaaaataa
gaatattaaaaacactttcttgcccgatcaaagagtttttcacggatcaaaccattgtca
aagtttttggaaaattttgggagacgtattttgtacaagctagtcaattgatttatctaa
tttccattgttcaaattgtatttttctctacttgttgtgtctattatcttatcattttca
aatattccaatgtctccgtcaccactcgtcgtcttcaatttcgtgtattcattggagtag
tgattcaaagtctgttaccagtggttttaactcatattcctttgatgattatcatgggta
gcaatgagcgcaaggagtatgatcaaatgaataataacttgtacattttaagtgcaatta
ttcataatggagttgcaagtttatccattcttctcgtacatggttcttatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTCTAGTTTTAACACCGCCATT 217 215 1643 Antisense
TAAAAACACTTTCTTGCCCGATCAA 275 627 1709 Antisense
GATTTATCTAATTTCCATTGTTCAA 295 429 1812 Antisense
TTTTCTCTACTTGTTGTGTCTATTA 426 677 1844 Antisense
GTGTCTATTATCTTATCATTTTCAA 381 487 1859 Antisense
TCAAATATTCCAATGTCTCCGTCAC 399 629 1880 Antisense
ACTCGTCGTCTTCAATTTCGTGTAT 426 97 1906 Antisense
AGTGATTCAAAGTCTGTTACCAGTG 705 59 1941 Antisense
GTGGTTTTAACTCATATTCCTTTGA 87 489 1963 Antisense
GCAAGTTTATCCATTCTTCTCGTAC 380 321 2077 Antisense
CTTCTCGTACATGGTTCTTATCGGA 103 221 2092 Antisense
Sequence Source Affymetrix Proprietary Database