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[177999_at]

Description K01A6.4 /REP_DB=WormBase Gene ID /WP=CE06037 /TR=Q21073 /GB=CAA92963.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 07      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 26.9
(0.3)
A 		7.4
(-3)
A 		43.4
(3)
A 		18.8
(-1.1)
A 		36
B 21.1
(-0.6)
A 		10
(-3)
A 		14.9
(-1.9)
A 		37.2
(3)
A 		27
C 9.3
(-3)
A 		17.9
(3)
A 		9.8
(-2.7)
A 		9.5
(-2.9)
A 		9
avr 19.1
(1) 		11.8
(-3) 		22.7
(3) 		21.8
(2.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 110
(3)
A 		54.2
(-0.4)
A 		10.6
(-3)
A 		20.2
(-2.4)
A 		38.7
(-1.3)
A 		26.7
(-2)
A 		99
B 116.5
(3)
P 		25.7
(-1.9)
A 		9.5
(-2.8)
A 		30.2
(-1.6)
A 		5.1
(-3)
A 		23.7
(-2)
A 		111
C 145.2
(3)
P 		57
(-0.8)
A 		18.7
(-2.4)
A 		25.7
(-2.1)
A 		5.3
(-3)
A 		38.4
(-1.6)
A 		140
avr 123.9
(3) 		45.6
(-1.2) 		12.9
(-3) 		25.4
(-2.3) 		16.4
(-2.8) 		29.6
(-2.1) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.8
(2.1)
A 		1.6
(-3)
A 		11.3
(3)
A 		2.8
(-2.3)
A 		10
B 6.7
(1.7)
A 		2.5
(-3)
A 		3.5
(-1.9)
A 		7.9
(3)
A 		5
C 3.1
(-0.4)
A 		5.1
(3)
A 		3.4
(0.1)
A 		1.6
(-3)
A 		4
avr 6.5
(3) 		3.1
(-3) 		6.1
(2.3) 		4.1
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 20.3
(3)
A 		19.3
(2.7)
A 		2.3
(-3)
A 		5.1
(-2.1)
A 		11.7
(0.1)
A 		6.5
(-1.6)
A 		18
B 40.6
(3)
P 		8.5
(-2)
A 		2.3
(-3)
A 		8
(-2.1)
A 		2.1
(-3)
A 		8.8
(-2)
A 		39
C 53.8
(3)
P 		17.4
(-1.2)
A 		4.8
(-2.6)
A 		5.2
(-2.6)
A 		1.7
(-3)
A 		12.9
(-1.7)
A 		52
avr 38.2
(3) 		15.1
(-0.9) 		3.1
(-3) 		6.1
(-2.5) 		5.2
(-2.6) 		9.4
(-1.9) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9957
Sequence Type Exemplar sequence
Representative Public ID K01A6.4 NCBI
Target Description K01A6.4 /REP_DB=WormBase Gene ID /WP=CE06037 /TR=Q21073 /GB=CAA92963.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069822 NCBI Caenorhabditis elegans K01A6.4 (K01A6.4) mRNA, complete cds. 11/11 None
SNAP00000040616 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11739065:11740254:-1 11/11 None
GENEFINDER00000040625 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11739065:11740254:-1 11/11 None
K01A6.4 ENSEMBL cdna:known chromosome:CEL140:IV:11739065:11740254:-1 gene:K01A6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11739070-11740260(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A6.4
Entrez Gene 186823 Entrez gene
SwissProt Q21073 EMBL-EBI
WormBase CE06037 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:177999_AT
gaggaaactctcagggtggattcggaggacaacaaggaggatttagtggaaattctccgg
gtggtttcgaaggacaacagggaggattcggtggatttggtcagcaagttggtttcggcg
ggcagggaggattcggaggtaacagtcaaggtggattcggaggtcagcaaagcggttttg
gtggtcaaggacagcaatcaggatttggcggaggttttggaggaaactctcaaaatggat
tcccagctcagagaccatcccaacagtctggatttggtggacaaggaatgcaatctggat
ttggaatgaactctcaacagggagatttcggtggacagggacagcaatctggatttgaag
gaaacacacaaggacactcccaaggaggatttggtgggcagtcgtcttctggatttggag
gtcagcaaggtgggcaaggtggacaaggtggattcggaggatctactagaaccggtggaa
tgcaaggaggacaaggaggacaaagtggatcaagtgggttcggtggattcggaggcttgg
gcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAACTCTCAGGGTGGATTCGG 481 401 266 Antisense
TGGTCAGCAAGTTGGTTTCGGCGGG 52 553 363 Antisense
TCGGCGGGCAGGGAGGATTCGGAGG 287 603 380 Antisense
GTCAAGGTGGATTCGGAGGTCAGCA 658 461 410 Antisense
ATGGATTCCCAGCTCAGAGACCATC 442 49 500 Antisense
GAGACCATCCCAACAGTCTGGATTT 505 393 516 Antisense
GGAGATTTCGGTGGACAGGGACAGC 610 517 586 Antisense
GAAACACACAAGGACACTCCCAAGG 36 357 626 Antisense
AGGAGGATTTGGTGGGCAGTCGTCT 522 55 648 Antisense
GGCAGTCGTCTTCTGGATTTGGAGG 527 519 662 Antisense
TTCGGTGGATTCGGAGGCTTGGGCC 464 695 784 Antisense
Sequence Source Affymetrix Proprietary Database