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[177998_at]

Description R02D5.1 /REP_DB=WormBase Gene ID /WP=CE12486 /TR=Q21636 /GB=CAB01433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 584.2
(3)
A 		357.6
(-1.6)
A 		372.9
(-1.3)
A 		290.5
(-3)
A 		294
B 578.7
(3)
A 		369.4
(-1.7)
A 		374.9
(-1.6)
A 		313.1
(-3)
A 		266
C 575.1
(3)
A 		439
(1)
A 		415.2
(0.6)
A 		176.3
(-3)
A 		399
avr 579.3
(3) 		388.7
(-0.6) 		387.7
(-0.6) 		260
(-3) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 406.8
(-0.7)
A 		556.5
(3)
A 		316.1
(-3)
A 		426.7
(-0.2)
A 		515
(2)
A 		361.8
(-1.9)
A 		240
B 417
(2.3)
A 		401.1
(1.7)
A 		311.7
(-1.4)
A 		438.6
(3)
A 		351.4
(-0)
A 		264.4
(-3)
A 		174
C 523.9
(3)
A 		377.4
(-0.1)
A 		505.3
(2.6)
A 		419.6
(0.8)
A 		440.5
(1.2)
A 		238.6
(-3)
A 		285
avr 449.2
(3) 		445
(2.8) 		377.7
(0.3) 		428.3
(2.2) 		435.6
(2.5) 		288.3
(-3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 212.7
(3)
A 		77.6
(-1.8)
A 		97.5
(-1.1)
A 		42.5
(-3)
A 		170
B 184.5
(3)
A 		91.2
(-1.8)
A 		86.9
(-2)
A 		66.7
(-3)
A 		118
C 190.4
(3)
A 		126.2
(0.6)
A 		144.7
(1.3)
A 		29.7
(-3)
A 		161
avr 195.9
(3) 		98.3
(-0.9) 		109.7
(-0.5) 		46.3
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 75
(-2.7)
A 		197.9
(3)
A 		68.8
(-3)
A 		108.2
(-1.2)
A 		155.4
(1)
A 		88.1
(-2.1)
A 		129
B 145.1
(3)
A 		133.5
(2)
A 		75.7
(-3)
A 		116.2
(0.5)
A 		142.8
(2.8)
A 		98.6
(-1)
A 		69
C 194.2
(3)
A 		115.2
(-1.1)
A 		128.6
(-0.4)
A 		84.4
(-2.8)
A 		142.5
(0.3)
A 		79.9
(-3)
A 		114
avr 138.1
(1.9) 		148.9
(3) 		91
(-2.8) 		102.9
(-1.6) 		146.9
(2.8) 		88.9
(-3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14658
Sequence Type Exemplar sequence
Representative Public ID R02D5.1 NCBI
Target Description R02D5.1 /REP_DB=WormBase Gene ID /WP=CE12486 /TR=Q21636 /GB=CAB01433.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074194 NCBI Caenorhabditis elegans R02D5.1 (R02D5.1) mRNA, complete cds. 11/11 None
SNAP00000007917 ENSEMBL cdna:SNAP chromosome:CEL140:V:14510842:14511736:1 11/11 None
GENEFINDER00000007923 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14510842:14511736:1 11/11 None
R02D5.1 ENSEMBL cdna:known chromosome:CEL140:V:14510842:14512231:1 gene:R02D5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14510841-14511736(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D5.1
Entrez Gene 179956 Entrez gene
SwissProt Q21636 EMBL-EBI
WormBase CE12486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01433 Hypothetical protein R02D5.1 [Caenorhabditis elegans] ref|NP_506595.1| R02D5.1 [Caenorhabditis elegans] 3.0E-93
blast CAE60883 Hypothetical protein CBG04595 [Caenorhabditis briggsae] 9.0E-54
Sequence
Target Sequence 
>C. ELEGANS:177998_AT
atccgtcacttcgacgtctacaacacaccatccttggatgccaatctcgctccgagagcc
gccaagcaagttccagaagcttagcacatctgacgcagctccacttcacaacgtctgcag
ctcactgaaaatgaaatccacaaaaccatcccgaaagcgtccatctccaaaggaatccga
cctacctccacttccatctatctcaacgctcttcgactctggatcctcctcccacagctc
aagctccagctccaattcatcctacggctcatactgtcagttctcacccgaaggatccta
caccatgtaccactggccgatgaactacattccctatgtgtcaccagatgtcacaatcac
agccactacatctacatcaacaaacgccatggcgagccctgatccgataatgttgagctc
tcccccgaagcagccaacaatcgagcacacgccaatcaatcagccactattcattcaaac
tgcagactatccatatgattactctgctccagacccaactggtggatatcccagcagtgc
cactatcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGTCACTTCGACGTCTACAACA 399 37 39 Antisense
TCTACAACACACCATCCTTGGATGC 486 613 55 Antisense
TCACAACGTCTGCAGCTCACTGAAA 154 627 144 Antisense
ACAAAACCATCCCGAAAGCGTCCAT 198 111 178 Antisense
CAATTCATCCTACGGCTCATACTGT 211 181 291 Antisense
CACTGGCCGATGAACTACATTCCCT 654 175 349 Antisense
CATTCCCTATGTGTCACCAGATGTC 449 217 366 Antisense
ACAAACGCCATGGCGAGCCCTGATC 693 111 418 Antisense
AAGCAGCCAACAATCGAGCACACGC 225 151 466 Antisense
GCCAATCAATCAGCCACTATTCATT 360 277 489 Antisense
ATATCCCAGCAGTGCCACTATCAAC 707 19 564 Antisense
Sequence Source Affymetrix Proprietary Database