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[177997_at]

Description F11F1.6 /REP_DB=WormBase Gene ID /WP=CE15806 /TR=O45348 /GB=CAB02928.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 80      6grp_total > 61      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 205.7
(-2.1)
P 		192
(-2.3)
P 		137.3
(-3)
P 		612.9
(3)
P 		476
B 212.1
(-2.6)
P 		218.6
(-2.5)
P 		181.7
(-3)
P 		648
(3)
P 		466
C 203.5
(-3)
P 		261.4
(-2.2)
P 		242.2
(-2.4)
P 		625.2
(3)
P 		422
avr 207.1
(-2.7) 		224
(-2.5) 		187.1
(-3) 		628.7
(3) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 150.5
(-2.1)
P 		216.9
(-0.5)
P 		328.5
(2.2)
P 		361.5
(3)
P 		198.4
(-0.9)
P 		111.9
(-3)
P 		250
B 195.1
(-0.9)
P 		217.4
(-0.4)
P 		250.4
(0.3)
P 		367.5
(3)
P 		214.1
(-0.5)
P 		103.8
(-3)
P 		264
C 208
(-1.1)
P 		256
(0.1)
P 		271.9
(0.5)
P 		369.7
(3)
P 		213.1
(-1)
P 		134.7
(-3)
P 		235
avr 184.5
(-1.4) 		230.1
(-0.3) 		283.6
(1) 		366.2
(3) 		208.5
(-0.8) 		116.8
(-3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 74.9
(1.3)
P 		41.7
(-2.4)
P 		35.9
(-3)
P 		89.7
(3)
P 		54
B 67.6
(-1.4)
P 		54
(-2.3)
P 		42.1
(-3)
P 		138.1
(3)
P 		96
C 67.4
(-3)
P 		75.1
(-1.8)
P 		84.4
(-0.3)
P 		105.4
(3)
P 		38
avr 70
(-1.3) 		56.9
(-2.7) 		54.1
(-3) 		111.1
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 27.7
(-3)
P 		77.1
(1.6)
P 		71.5
(1.1)
P 		91.7
(3)
P 		59.9
(0)
P 		27.2
(-3)
P 		65
B 67.9
(-0)
P 		72.4
(0.5)
P 		60.8
(-0.7)
P 		97.3
(3)
P 		87
(1.9)
P 		38.7
(-3)
P 		59
C 77.1
(2.8)
P 		78.1
(3)
P 		69.2
(1.4)
P 		74.3
(2.3)
P 		69
(1.3)
P 		45.1
(-3)
P 		33
avr 57.6
(-0.6) 		75.9
(1.6) 		67.2
(0.6) 		87.8
(3) 		72
(1.1) 		37
(-3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177997_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6829
Sequence Type Exemplar sequence
Representative Public ID F11F1.6 NCBI
Target Description F11F1.6 /REP_DB=WormBase Gene ID /WP=CE15806 /TR=O45348 /GB=CAB02928.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067365 NCBI Caenorhabditis elegans F11F1.6 (F11F1.6) mRNA, complete cds. 11/11 None
SNAP00000021814 ENSEMBL cdna:SNAP chromosome:CEL140:III:13402819:13403822:1 11/11 None
GENEFINDER00000021816 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13402819:13405161:1 11/11 None
F11F1.6 ENSEMBL cdna:known chromosome:CEL140:III:13402819:13403822:1 gene:F11F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13402814-13403818(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11F1.6
Entrez Gene 184362 Entrez gene
SwissProt O45348 EMBL-EBI
WormBase CE33613 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02928 Hypothetical protein F11F1.6 [Caenorhabditis elegans] ref|NP_499766.2| F11F1.6 [Caenorhabditis elegans] 1.0E-137
blast CAB02928 Hypothetical protein F11F1.6 [Caenorhabditis elegans] ref|NP_499766.2| F11F1.6 [Caenorhabditis elegans] 1.0E-133
blast CAB02928 Hypothetical protein F11F1.6 [Caenorhabditis elegans] ref|NP_499766.2| F11F1.6 [Caenorhabditis elegans] 1.0E-122
blast CAE73707 Hypothetical protein CBG21220 [Caenorhabditis briggsae] 1.0E-104
blast CAE73707 Hypothetical protein CBG21220 [Caenorhabditis briggsae] 1.0E-103
blast CAE73707 Hypothetical protein CBG21220 [Caenorhabditis briggsae] 1.0E-102
blast CAB02929 Hypothetical protein F11F1.7 [Caenorhabditis elegans] ref|NP_499767.1| F11F1.7 [Caenorhabditis elegans] 3.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 6.8E-17
Sequence
Target Sequence 
>C. ELEGANS:177997_AT
ctcttggttttgtgtactgtctattcatatgttatctcacaatgtgatgataatggagtc
atttatacaaatggagacaagtggatccgaaataatcattttttggtcacttgtcgagat
ggaaatattcagactctaaaatgtgtaaccgacagtggtcatttactagaagtcggctcc
aaaagctatgtggaaaatggatatgaatacatgtgtgcacgtgaagttacggataatctg
aacacaaacacttgccccacattcgccgatttttccgatgatattttcaaggatagattc
gcaatttgttgtatttcaagacgatttaaaggatgtgttgatgcaaatggagatattgtc
aagagattcaggcaaatcaattacaggcaaggattgagccgaaaggcaagttgcttcaac
ggaacagagaaagacgatgtaaatgatgaagaattgcacattaaaaaatatgcagtttgg
cgcgaaggtgacattgagtatcgttgtggagatgatggagttcatattcaaagatgcttt
ccgcctgaactcaagaaaaaggctatttgggctggaacggcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTGGTTTTGTGTACTGTCTATT 671 227 31 Antisense
ACTGTCTATTCATATGTTATCTCAC 655 97 46 Antisense
ATCATTTTTTGGTCACTTGTCGAGA 81 31 125 Antisense
GTGTAACCGACAGTGGTCATTTACT 94 483 173 Antisense
GGTCATTTACTAGAAGTCGGCTCCA 569 503 187 Antisense
GAAGTCGGCTCCAAAAGCTATGTGG 196 337 199 Antisense
AATCTGAACACAAACACTTGCCCCA 267 169 265 Antisense
CCACATTCGCCGATTTTTCCGATGA 370 275 287 Antisense
GCAGTTTGGCGCGAAGGTGACATTG 82 313 502 Antisense
TTCAAAGATGCTTTCCGCCTGAACT 631 683 557 Antisense
AGGCTATTTGGGCTGGAACGGCTTG 72 1 590 Antisense
Sequence Source Affymetrix Proprietary Database