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[177996_s_at] --- /// --- /// ---

Description F57G4.2 /REP_DB=WormBase Gene ID /WP=CE18767 /TR=Q9XUX5 /GB=CAB04507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 26.2
(-0.6)
A 		41.9
(1.2)
A 		4.3
(-3)
A 		58.3
(3)
A 		54
B 6.1
(3)
A 		4.4
(-0.9)
A 		5.8
(2.3)
A 		3.5
(-3)
A 		3
C 8.9
(-3)
A 		8.3
(-3)
A 		27.3
(-1.4)
A 		80.9
(3)
A 		73
avr 13.7
(-2.8) 		18.2
(-2) 		12.5
(-3) 		47.6
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 5.3
(-2.5)
A 		3
(-2.8)
A 		46.9
(3)
A 		3
(-2.8)
A 		25.7
(0.2)
A 		1.5
(-3)
A 		45
B 3
(0.6)
A 		4.1
(3)
A 		1.4
(-3)
A 		1.7
(-2.3)
A 		2.9
(0.3)
A 		1.5
(-2.8)
A 		3
C 4.7
(-2.7)
A 		3.9
(-3)
A 		19.2
(3)
A 		6.3
(-2.1)
A 		5.5
(-2.4)
A 		16.4
(1.9)
A 		15
avr 4.3
(-2.8) 		3.7
(-3) 		22.5
(3) 		3.7
(-3) 		11.4
(-0.5) 		6.5
(-2.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.6
(3)
A 		9.1
(2.6)
A 		1.1
(-3)
A 		8.5
(2.2)
A 		9
B 2
(3)
A 		1.1
(-1.2)
A 		1.3
(-0.2)
A 		0.7
(-3)
A 		1
C 3
(-2.7)
A 		2.4
(-3)
A 		9.5
(0.8)
A 		13.6
(3)
A 		11
avr 4.9
(-1.5) 		4.2
(-2.7) 		4
(-3) 		7.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-2.6)
A 		1.1
(-2.6)
A 		10.2
(3)
A 		0.8
(-2.8)
A 		7.8
(1.5)
A 		0.4
(-3)
A 		10
B 1
(0.8)
A 		1.4
(3)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		1.2
(1.9)
A 		0.6
(-1.4)
A 		1
C 1.7
(-2.3)
A 		1.2
(-3)
A 		4.9
(2.2)
A 		1.3
(-2.9)
A 		1.8
(-2.2)
A 		5.5
(3)
A 		4
avr 1.2
(-2.4) 		1.2
(-2.4) 		5.1
(3) 		0.8
(-3) 		3.6
(0.9) 		2.2
(-1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177996_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13050
Sequence Type Exemplar sequence
Representative Public ID F57G4.2 NCBI
Target Description F57G4.2 /REP_DB=WormBase Gene ID /WP=CE18767 /TR=Q9XUX5 /GB=CAB04507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061031(11), NM_075058(11), NM_067869(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061031 NCBI Caenorhabditis elegans Y71A12B.7 (Y71A12B.7) mRNA, complete cds. 11/11 A 
NM_075058 NCBI Caenorhabditis elegans F57G4.2 (F57G4.2) mRNA, complete cds. 11/11 A 
NM_067869 NCBI Caenorhabditis elegans Y54G2A.21 (Y54G2A.21) mRNA, complete cds. 10/11 A 
SNAP00000038367 ENSEMBL cdna:SNAP chromosome:CEL140:I:13938164:13942592:1 11/11 None
GENEFINDER00000038392 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13938164:13942774:1 11/11 None
SNAP00000036503 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2904148:2908518:-1 11/11 None
GENEFINDER00000036619 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2904148:2908518:-1 11/11 None
SNAP00000009857 ENSEMBL cdna:SNAP chromosome:CEL140:V:17636442:17638746:-1 11/11 None
GENEFINDER00000009866 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17636442:17638746:-1 11/11 None
Y71A12B.7 ENSEMBL cdna:known chromosome:CEL140:I:13938164:13943022:1 gene:Y71A12B.7 11/11 A 
Y54G2A.21 ENSEMBL cdna:known chromosome:CEL140:IV:2906435:2913810:-1 gene:Y54G2A.21 10/11 A 
F57G4.2 ENSEMBL cdna:known chromosome:CEL140:V:17636442:17638746:-1 gene:F57G4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title


Ensembl Y71A12B.7
Y54G2A.21
F57G4.2
Entrez Gene 186457 Entrez gene
190282 Entrez gene
190577 Entrez gene
SwissProt Q9XUX5 EMBL-EBI
Q9N3B2 EMBL-EBI
Q9GRV3 EMBL-EBI
WormBase CE18767 Wormbase
CE36896 Wormbase
CE26240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 0.0
blast CAB00875 Hypothetical protein T16A9.1 [Caenorhabditis elegans] ref|NP_506516.1| T16A9.1 [Caenorhabditis elegans] 0.0
blast AAF60812 Hypothetical protein Y55H10B.1 [Caenorhabditis elegans] ref|NP_500320.1| Y55H10B.1 [Caenorhabditis elegans] 0.0
blast CAB04507 Hypothetical protein F57G4.2 [Caenorhabditis elegans] ref|NP_507459.1| F57G4.2 [Caenorhabditis elegans] 0.0
blast AAF59577 Hypothetical protein Y54G2A.21 [Caenorhabditis elegans] ref|NP_500270.3| Y54G2A.21 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177996_S_AT
gcacgtggacaccacgtacaacctcggggatgcctacgtgacgacacttctcggagaaac
aaacacatttatgacaacgagatcaaggaagaatagagtcttaccgttgtgttatatgat
tcacacttctcgggctactgaagtccaccagggattcgcctcttttattgttgaagaatt
tagaaaggcaggaggagttccaagtgggaaaatcatcccatgtcttctaatggatggcga
attcagtttaactgaatacagcaaagcgttggacgtgagagttatacgatgtgatctgca
catctattcgttgatgattcaaaagttcaaaagaccaaaggcggacaaggcgaagccttt
tgtattcggagttcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGTGGACACCACGTACAACCTC 202 311 855 Antisense
CGTACAACCTCGGGGATGCCTACGT 423 243 869 Antisense
CCTACGTGACGACACTTCTCGGAGA 164 267 887 Antisense
GAATAGAGTCTTACCGTTGTGTTAT 227 323 945 Antisense
TATATGATTCACACTTCTCGGGCTA 172 661 967 Antisense
ACTTCTCGGGCTACTGAAGTCCACC 428 103 979 Antisense
ATGGATGGCGAATTCAGTTTAACTG 640 51 1084 Antisense
GAATACAGCAAAGCGTTGGACGTGA 112 327 1108 Antisense
GAGAGTTATACGATGTGATCTGCAC 691 395 1131 Antisense
AGACCAAAGGCGGACAAGGCGAAGC 178 69 1186 Antisense
AAGCCTTTTGTATTCGGAGTTCAGC 9 149 1207 Antisense
Sequence Source Affymetrix Proprietary Database