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[177993_at]

Description F59F5.2 /REP_DB=WormBase Gene ID /WP=CE26715 /TR=Q21045 /GB=CAA90656.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1105
1 2 3 4 range
A 469.3
(-3)
P 		560.9
(-2.3)
P 		574.3
(-2.2)
P 		1285.1
(3)
P 		816
B 630.4
(-2.3)
P 		607.8
(-2.4)
P 		510.8
(-3)
P 		1513.6
(3)
P 		1003
C 408.5
(-3)
P 		679.6
(-1.3)
P 		733.3
(-1)
P 		1363.2
(3)
P 		955
avr 502.7
(-3) 		616.1
(-2.2) 		606.1
(-2.3) 		1387.3
(3) 		885

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 314.7
(-3)
P 		330.2
(-2.8)
P 		337.1
(-2.7)
P 		361.6
(-2.4)
P 		400
(-2)
P 		822.9
(3)
P 		508
B 346.1
(-1.7)
P 		325.7
(-2.1)
P 		277.2
(-3)
P 		330.4
(-2)
P 		352.2
(-1.6)
P 		590.2
(3)
P 		313
C 324.5
(-2.5)
P 		291
(-3)
P 		366.6
(-1.9)
P 		455.2
(-0.6)
P 		339.4
(-2.3)
P 		700.9
(3)
P 		410
avr 328.4
(-2.8) 		315.6
(-3) 		327
(-2.8) 		382.4
(-2) 		363.9
(-2.3) 		704.7
(3) 		389
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 170.9
(1.4)
P 		121.8
(-3)
P 		150.1
(-0.4)
P 		188.1
(3)
P 		66
B 201
(-0.6)
P 		150.1
(-2.1)
P 		118.4
(-3)
P 		322.5
(3)
P 		204
C 135.2
(-3)
P 		195.4
(0)
P 		255.6
(3)
P 		229.9
(1.7)
P 		120
avr 169
(-2.1) 		155.8
(-3) 		174.7
(-1.8) 		246.8
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 58
(-3)
P 		117.4
(-0.5)
P 		73.4
(-2.4)
P 		91.7
(-1.6)
P 		120.7
(-0.4)
P 		200.4
(3)
P 		142
B 120.4
(-0.9)
P 		108.4
(-1.4)
P 		67.3
(-3)
P 		87.5
(-2.2)
P 		143.1
(-0)
P 		220.1
(3)
P 		153
C 120.3
(-1.7)
P 		88.8
(-3)
P 		93.3
(-2.8)
P 		91.5
(-2.9)
P 		109.8
(-2.1)
P 		234.6
(3)
P 		146
avr 99.6
(-2.1) 		104.9
(-1.9) 		78
(-3) 		90.2
(-2.5) 		124.5
(-1) 		218.4
(3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16549
Sequence Type Exemplar sequence
Representative Public ID F59F5.2 NCBI
Target Description F59F5.2 /REP_DB=WormBase Gene ID /WP=CE26715 /TR=Q21045 /GB=CAA90656.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077363 NCBI Caenorhabditis elegans F59F5.8 (F59F5.8) mRNA, complete cds. 11/11 None
SNAP00000005591 ENSEMBL cdna:SNAP chromosome:CEL140:X:10533711:10537040:1 11/11 None
GENEFINDER00000005598 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10533711:10537088:1 11/11 None
F59F5.8 ENSEMBL cdna:known chromosome:CEL140:X:10534736:10537040:1 gene:F59F5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10533680-10537040(+) 99.51 100.0
Public Domain and Genome References
Gene Title
Ensembl F59F5.8
Entrez Gene 3565616 Entrez gene
SwissProt Q9BI85 EMBL-EBI
WormBase CE26716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35819 Hypothetical protein F59F5.8 [Caenorhabditis elegans] ref|NP_509764.1| F59F5.8 [Caenorhabditis elegans] 0.0
blast T23014 hypothetical protein F59F5.2 - Caenorhabditis elegans 0.0
blast CAE60797 Hypothetical protein CBG04489 [Caenorhabditis briggsae] 1.0E-174
Sequence
Target Sequence 
>C. ELEGANS:177993_AT
gttcttggagaagtgccctttcgacaatgtcacttagttcgtcggtgtttaccagaataa
ccatggacgacaagacgatgactcaaaaaatggatattctactttcctacggaaaaaagc
aaattaattcattgatacaagagctgtgttctataagtattgctaatgcgaaactatcta
cactccctctattcaatcagtgcttggaaaaaactgtaaaaccgaactcagtcaaagccg
ttgattctttaggaataggttcaaaagaacaagaggataaattagaaaagtttttgaaac
catcagagtttttcttagaaatgtatgcttatcgaatacagtttgacgatttgaaacaag
aaattacatacatctcagatgaatacaaagaaaatgtaaactggattcgacagctaaaaa
gtgcaaatcgattcagttgtgattatcttcggaactctggagaaaagtttatgatatttc
atttcaatctaccaaatttgaatcagaaatctaccgaatgtcgttcaaatatcagaatga
cagctgttttcccagaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTGGAGAAGTGCCCTTTCGAC 662 443 1238 Antisense
GAAGTGCCCTTTCGACAATGTCACT 633 335 1247 Antisense
AATGTCACTTAGTTCGTCGGTGTTT 406 163 1263 Antisense
GTCGGTGTTTACCAGAATAACCATG 26 473 1278 Antisense
ATGGACGACAAGACGATGACTCAAA 78 53 1300 Antisense
TAATGCGAAACTATCTACACTCCCT 590 635 1401 Antisense
ACTCCCTCTATTCAATCAGTGCTTG 294 99 1419 Antisense
AACCGAACTCAGTCAAAGCCGTTGA 316 145 1457 Antisense
GTTGTGATTATCTTCGGAACTCTGG 74 437 1673 Antisense
AATCAGAAATCTACCGAATGTCGTT 430 169 1738 Antisense
GAATGACAGCTGTTTTCCCAGAATA 461 331 1772 Antisense
Sequence Source Affymetrix Proprietary Database