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[177992_at]

Description F07H5.7 /REP_DB=WormBase Gene ID /WP=CE03156 /TR=Q19181 /GB=CAA92661.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 581
1 2 3 4 range
A 86.4
(-2.7)
P 		73.4
(-2.8)
M 		59.8
(-3)
A 		531.4
(3)
P 		472
B 76.6
(-3)
A 		119.6
(-2.5)
A 		77
(-3)
A 		629.2
(3)
P 		553
C 80.2
(-2.7)
A 		60.8
(-2.9)
A 		48.4
(-3)
A 		600.2
(3)
P 		552
avr 81.1
(-2.8) 		84.6
(-2.7) 		61.7
(-3) 		586.9
(3) 		525

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 85
(1.5)
A 		56
(-0.8)
A 		65.7
(-0.1)
M 		54.2
(-1)
A 		29
(-3)
A 		104.1
(3)
M 		75
B 87.6
(0.8)
A 		48.1
(-1.2)
A 		14.7
(-3)
A 		19.7
(-2.7)
A 		71.2
(-0)
A 		128.4
(3)
P 		114
C 87.2
(-0.4)
A 		42.7
(-2.7)
A 		44.9
(-2.6)
A 		73.1
(-1.1)
A 		37.2
(-3)
A 		153
(3)
A 		116
avr 86.6
(0.1) 		48.9
(-2.5) 		41.8
(-3) 		49
(-2.5) 		45.8
(-2.7) 		128.5
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 31.4
(-1.5)
P 		15.9
(-3)
M 		15.6
(-3)
A 		77.8
(3)
P 		62
B 24.4
(-2.7)
A 		29.5
(-2.4)
A 		17.8
(-3)
A 		134.1
(3)
P 		116
C 26.6
(-2.3)
A 		17.5
(-3)
A 		16.9
(-3)
A 		101.2
(3)
P 		84
avr 27.5
(-2.3) 		21
(-2.7) 		16.8
(-3) 		104.4
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 15.7
(-0.5)
A 		19.9
(1)
A 		14.3
(-1)
M 		13.7
(-1.2)
A 		8.7
(-3)
A 		25.3
(3)
M 		17
B 30.5
(0.6)
A 		16
(-1.3)
A 		3.6
(-3)
A 		5.2
(-2.8)
A 		28.9
(0.4)
A 		47.9
(3)
P 		44
C 32.3
(0.2)
A 		13
(-2.8)
A 		11.4
(-3)
A 		14.7
(-2.5)
A 		12.1
(-2.9)
A 		51.2
(3)
A 		40
avr 26.2
(0.1) 		16.3
(-1.8) 		9.8
(-3) 		11.2
(-2.7) 		16.6
(-1.7) 		41.5
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2891
Sequence Type Exemplar sequence
Representative Public ID F07H5.7 NCBI
Target Description F07H5.7 /REP_DB=WormBase Gene ID /WP=CE03156 /TR=Q19181 /GB=CAA92661.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063471(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063471 NCBI Caenorhabditis elegans F07H5.7 (F07H5.7) mRNA, complete cds. 11/11 None
SNAP00000026207 ENSEMBL cdna:SNAP chromosome:CEL140:II:8793195:8794072:-1 11/11 None
GENEFINDER00000026216 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8793195:8794072:-1 11/11 None
F07H5.7 ENSEMBL cdna:known chromosome:CEL140:II:8793195:8794072:-1 gene:F07H5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8793191-8794069(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07H5.7
Entrez Gene 184164 Entrez gene
SwissProt Q19181 EMBL-EBI
WormBase CE03156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92661 Hypothetical protein F07H5.7 [Caenorhabditis elegans] ref|NP_495872.1| F07H5.7 [Caenorhabditis elegans] 1.0E-108
blast CAE59735 Hypothetical protein CBG03175 [Caenorhabditis briggsae] 4.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495872.1 1 129-151
F07H5.7 1 129-151
SNAP00000026207 1 129-151
GENEFINDER00000026216 1 129-151
Sequence
Target Sequence 
>C. ELEGANS:177992_AT
ttggtatcgcacgcggagacctgattcggactgtgtactgtgccaacaagtgcaacgatt
acctgaaagttccggaggcaaacattccaaaatgtgaagagagacatttgaagttgaacc
aatgtggaactgtaatatcatgttcgtgggcggatgtggagcttgagaagcaacgaacaa
ttgccaatgcaactgatgactttgtttgttgctacgatgtcgtgctgaaagaaaagggag
actgtgatgcccaacaagctgtcgtttcctcaaataagaacacgcaccgactacatcatc
caacggactgtttctcacagactcctgctctattcagcatcattgcaattttactgatcc
ttttagccgcacagagcttctatatcatgtggacttgcgcttttcaacgtcgactgtatc
atcaaaaagtgtgtcaactagaagaatctacagtaacccattcacaaggtcccctgtatc
cagcaaagccagtctgcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTATCGCACGCGGAGACCTGAT 361 709 62 Antisense
GATTCGGACTGTGTACTGTGCCAAC 442 431 84 Antisense
GAGACTGTGATGCCCAACAAGCTGT 321 393 299 Antisense
AACAAGCTGTCGTTTCCTCAAATAA 574 131 314 Antisense
TAAGAACACGCACCGACTACATCAT 633 637 336 Antisense
AACGGACTGTTTCTCACAGACTCCT 210 143 363 Antisense
ACTCCTGCTCTATTCAGCATCATTG 442 99 382 Antisense
TACTGATCCTTTTAGCCGCACAGAG 541 645 413 Antisense
ATATCATGTGGACTTGCGCTTTTCA 537 19 443 Antisense
TGCGCTTTTCAACGTCGACTGTATC 315 583 457 Antisense
GTATCCAGCAAAGCCAGTCTGCGAG 514 455 537 Antisense
Sequence Source Affymetrix Proprietary Database