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[177991_at]

Description T11B7.1 /REP_DB=WormBase Gene ID /WP=CE23976 /TR=Q22387 /GB=CAA90987.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 16.9
(0.1)
A 		21.1
(1.2)
A 		5.4
(-3)
A 		27.7
(3)
A 		22
B 20.1
(-2)
A 		9.6
(-3)
A 		36.4
(-0.3)
A 		69.6
(3)
P 		60
C 2.8
(-3)
A 		21.4
(-0.7)
A 		21.9
(-0.7)
A 		51.9
(3)
A 		49
avr 13.3
(-3) 		17.4
(-2.3) 		21.2
(-1.7) 		49.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 1.7
(-3)
A 		30.5
(0.6)
A 		23.5
(-0.3)
A 		38.7
(1.7)
P 		49.3
(3)
P 		34.6
(1.1)
P 		48
B 50
(0.7)
P 		24.2
(-1.7)
A 		29.8
(-1.2)
A 		33.6
(-0.8)
A 		10.4
(-3)
A 		74.3
(3)
P 		64
C 18.2
(-3)
A 		19.9
(-2.9)
A 		22
(-2.7)
A 		24.6
(-2.5)
A 		23.7
(-2.6)
P 		97.6
(3)
P 		79
avr 23.3
(-3) 		24.9
(-2.8) 		25.1
(-2.8) 		32.3
(-1.8) 		27.8
(-2.4) 		68.8
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.2
(3)
A 		4.6
(1)
A 		1.4
(-3)
A 		4.1
(0.4)
A 		5
B 6.4
(-1.1)
A 		2.4
(-3)
A 		8.4
(-0.1)
A 		14.8
(3)
P 		12
C 0.9
(-3)
A 		6.1
(1)
A 		7.6
(2.2)
A 		8.7
(3)
A 		8
avr 4.5
(-2.9) 		4.4
(-3) 		5.8
(-1.3) 		9.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.3
(-3)
A 		10.9
(1.4)
A 		5.1
(-1)
A 		9.8
(0.9)
P 		14.9
(3)
P 		8.4
(0.3)
P 		15
B 17.4
(0.4)
P 		8.1
(-2)
A 		7.2
(-2.2)
A 		8.9
(-1.8)
A 		4.2
(-3)
A 		27.7
(3)
P 		24
C 6.7
(-2.6)
A 		6.1
(-2.8)
A 		5.6
(-2.9)
A 		5
(-3)
A 		7.7
(-2.4)
P 		32.7
(3)
P 		28
avr 8.1
(-2.3) 		8.4
(-2.1) 		6
(-3) 		7.9
(-2.3) 		8.9
(-2) 		22.9
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9588
Sequence Type Exemplar sequence
Representative Public ID T11B7.1 NCBI
Target Description T11B7.1 /REP_DB=WormBase Gene ID /WP=CE23976 /TR=Q22387 /GB=CAA90987.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069129 NCBI Caenorhabditis elegans T11B7.1 (T11B7.1) mRNA, complete cds. 11/11 None
SNAP00000029864 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8841166:8842554:1 11/11 None
GENEFINDER00000029875 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8840707:8842554:1 11/11 None
T11B7.1 ENSEMBL cdna:known chromosome:CEL140:IV:8840707:8842787:1 gene:T11B7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8840712-8842560(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11B7.1
Entrez Gene 177698 Entrez gene
SwissProt Q22387 EMBL-EBI
WormBase CE23976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90987 Hypothetical protein T11B7.1 [Caenorhabditis elegans] ref|NP_501530.1| T11B7.1 [Caenorhabditis elegans] 0.0
blast AAC63403 repeat organellar protein [Plasmodium chabaudi] 1.0E-9
blast XP_885164 PREDICTED: similar to Hook-related protein 1 isoform 5 [Bos taurus] ref|XP_885091.1| PREDICTED: similar to Hook-related protein 1 isoform 3 [Bos taurus] 2.0E-9
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 9.80000019073486
Sequence
Target Sequence 
>C. ELEGANS:177991_AT
attggagagctcacagctggaaacaaaacagagaatcgttcaccaactccaacattgcag
ggacttattgaaattcttcaaaagttttcagacgatcaaaaacttgaaccagaatgtaag
atgctgcagttgcataaagaggagtgtcgtttgattttggaaagtcttgaagtgcacgat
aagaaagatcaagagattcagtggttccaaagacaaattaacgatcagaaaaaaagaatc
gctaatcttggttggtcatacgaaaatgctcttgaagataaggatgctctagaattaaag
cttgaacatcaatacgagcagatgatggaattgaaaaagaatttcattccgaaaaacgaa
atttctgaggatttggcgaagactgtcagaaattttggaaaacgtctcagaaattctcga
ggaaatttgaagaatgcgttcaaagaattagaagctttaaaagaagttcaagaggaagaa
ggctcatcagatgaaagttctgaaagcagcgcttctgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGAGAGCTCACAGCTGGAAACA 551 3 796 Antisense
CAGAGAATCGTTCACCAACTCCAAC 75 207 824 Antisense
ACCAACTCCAACATTGCAGGGACTT 450 1 837 Antisense
AGAGGAGTGTCGTTTGATTTTGGAA 682 67 933 Antisense
GGAAAGTCTTGAAGTGCACGATAAG 188 75 954 Antisense
GATCAAGAGATTCAGTGGTTCCAAA 309 419 982 Antisense
GAATCGCTAATCTTGGTTGGTCATA 27 331 1031 Antisense
GTTGGTCATACGAAAATGCTCTTGA 72 437 1046 Antisense
GAGGATTTGGCGAAGACTGTCAGAA 380 403 1162 Antisense
AAACGTCTCAGAAATTCTCGAGGAA 408 125 1195 Antisense
AGTTCTGAAAGCAGCGCTTCTGATG 565 63 1291 Antisense
Sequence Source Affymetrix Proprietary Database