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[177990_at]

Description F11A5.2 /REP_DB=WormBase Gene ID /WP=CE15780 /TR=O17787 /GB=CAB07355.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 0      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 12.2
(-3)
A 		15.3
(-2.5)
A 		25.9
(-1)
A 		52.3
(3)
A 		40
B 12.6
(-2.4)
A 		7.9
(-3)
A 		52.5
(3)
A 		13.1
(-2.3)
A 		45
C 9.9
(-2.2)
A 		6.3
(-3)
A 		7.8
(-2.7)
A 		32.8
(3)
A 		27
avr 11.6
(-2.5) 		9.8
(-3) 		28.7
(2) 		32.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 7.4
(-2.2)
A 		40.8
(3)
A 		5
(-2.6)
A 		2.5
(-3)
A 		40.1
(2.9)
A 		10.6
(-1.7)
A 		38
B 30
(0.9)
A 		41.5
(3)
M 		17.6
(-1.4)
A 		8.7
(-3)
A 		16.3
(-1.6)
A 		19.1
(-1.1)
A 		33
C 37.9
(1.7)
A 		47.7
(3)
P 		8
(-2.2)
A 		4.7
(-2.6)
A 		19
(-0.7)
A 		1.5
(-3)
A 		46
avr 25.1
(0.1) 		43.3
(3) 		10.2
(-2.2) 		5.3
(-3) 		25.1
(0.1) 		10.4
(-2.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.4
(-1.5)
A 		3.3
(-3)
A 		6.8
(1.8)
A 		7.7
(3)
A 		4
B 4
(-1.8)
A 		2
(-3)
A 		12.2
(3)
A 		2.8
(-2.5)
A 		10
C 3.3
(-0.6)
A 		1.8
(-3)
A 		2.7
(-1.5)
A 		5.5
(3)
A 		4
avr 3.9
(-1.1) 		2.4
(-3) 		7.2
(3) 		5.3
(0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.4
(-2.7)
A 		14.5
(3)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		12.1
(2)
A 		2.6
(-2.1)
A 		14
B 10.4
(1.2)
A 		13.8
(3)
M 		4.3
(-2)
A 		2.3
(-3)
A 		6.6
(-0.8)
A 		7.1
(-0.5)
A 		12
C 14
(2.8)
A 		14.5
(3)
P 		2
(-2.4)
A 		0.9
(-2.8)
A 		6.2
(-0.6)
A 		0.5
(-3)
A 		14
avr 8.6
(0.4) 		14.3
(3) 		2.5
(-2.4) 		1.3
(-3) 		8.3
(0.2) 		3.4
(-2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13590
Sequence Type Exemplar sequence
Representative Public ID F11A5.2 NCBI
Target Description F11A5.2 /REP_DB=WormBase Gene ID /WP=CE15780 /TR=O17787 /GB=CAB07355.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074681 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-279) (srh-279) mRNA, complete cds. 11/11 None
SNAP00000026995 ENSEMBL cdna:SNAP chromosome:CEL140:V:16195939:16197164:1 9/11 None
F11A5.2 ENSEMBL cdna:known chromosome:CEL140:V:16195939:16197164:1 gene:F11A5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027010 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16195938-16197164(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-279
Ensembl F11A5.2
Entrez Gene 184329 Entrez gene
SwissProt O17787 EMBL-EBI
WormBase CE35461 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07355 Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] 1.0E-177
blast CAB07355 Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] 1.0E-145
blast CAB07354 Hypothetical protein F11A5.1 [Caenorhabditis elegans] ref|NP_507081.1| Serpentine Receptor, class H family member (srh-281) [Caenorhabditis elegans] 1.0E-139
blast CAE61106 Hypothetical protein CBG04863 [Caenorhabditis briggsae] 1.0E-135
blast CAB07354 Hypothetical protein F11A5.1 [Caenorhabditis elegans] ref|NP_507081.1| Serpentine Receptor, class H family member (srh-281) [Caenorhabditis elegans] 1.0E-120
blast CAE61106 Hypothetical protein CBG04863 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-69
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.3E-41
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.0E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507082.2 7 15-37,50-72,92-114,135-154,196-215,245-267,272-294
F11A5.2 7 15-37,50-72,92-114,135-154,196-215,245-267,272-294
SNAP00000026995 7 15-37,50-72,92-111,132-154,169-188,242-264,274-293
Sequence
Target Sequence 
>C. ELEGANS:177990_AT
cgccgagcactcttggtggcggtttgctcgtcggcctttcctagccatcaactacattct
cgggctgctctactacgtcccaactgtgctcagtgtccccgaacaaaccagtgcccgagc
tgcaactttcaaggaattccccgaatttcggcagttagataccccggaaaacccgatcta
tgtactggttttgaacaatccatgggtttcggtgcggcaaattgctatggaagcgactgt
tgtgatagagacgggaattatagtttgtctgttgaaatttaaaatgaaaaacgttgtgaa
agaaatgaaaatgtccgagagcacagcgaaactacaaaaggcttttttgaaggctctgta
tattcaggtctccctaccacttcttgtaattctcctaccatctgctgtatcagtattttc
tggaatcttaggcatctcaactcaaagtgtcaataacctagtgtatattacattctcctg
ccatggattgacctcaaccatcgtgatgctgatcattcaaaatccgtatcgagagttttg
tttagtaatggtcggaaagtcgcaccggcgacagaaaatttctgccacatcgacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCGAGCACTCTTGGTGGCGGTTT 373 255 480 Antisense
AACAATCCATGGGTTTCGGTGCGGC 278 133 673 Antisense
ATGTCCGAGAGCACAGCGAAACTAC 215 43 790 Antisense
TGAAGGCTCTGTATATTCAGGTCTC 156 575 827 Antisense
TTCTCCTACCATCTGCTGTATCAGT 3 695 869 Antisense
GGAATCTTAGGCATCTCAACTCAAA 113 533 901 Antisense
CATTCTCCTGCCATGGATTGACCTC 311 217 950 Antisense
GACCTCAACCATCGTGATGCTGATC 178 383 969 Antisense
GCTGATCATTCAAAATCCGTATCGA 264 295 987 Antisense
AATGGTCGGAAAGTCGCACCGGCGA 564 161 1026 Antisense
AGAAAATTTCTGCCACATCGACAAT 289 73 1052 Antisense
Sequence Source Affymetrix Proprietary Database