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[177988_at]

Description W04G5.9 /REP_DB=WormBase Gene ID /WP=CE14598 /TR=O18173 /GB=CAB07685.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.7
(-2.6)
A 		5.7
(-1.4)
A 		3
(-3)
A 		13.1
(3)
A 		10
B 2
(-3)
A 		8.1
(3)
A 		2
(-3)
A 		4.5
(-0.5)
A 		6
C 1.6
(-3)
A 		1.8
(-2.8)
A 		2
(-2.6)
A 		8.1
(3)
A 		7
avr 2.4
(-2.9) 		5.2
(-0.2) 		2.3
(-3) 		8.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.8
(-1.7)
A 		1.7
(-3)
A 		5.9
(2.1)
A 		6.6
(3)
A 		1.8
(-2.9)
A 		4.3
(0.2)
A 		5
B 1.6
(-0.8)
A 		1.3
(-2.5)
A 		1.5
(-1.4)
A 		2.3
(3)
A 		2.3
(3)
A 		1.2
(-3)
A 		1
C 1.4
(-3)
A 		3.8
(3)
A 		2
(-1.5)
A 		3.3
(1.8)
A 		2.9
(0.8)
A 		1.8
(-2)
A 		2
avr 1.9
(-3) 		2.3
(-1.9) 		3.1
(0.3) 		4.1
(3) 		2.3
(-1.9) 		2.4
(-1.6) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(-0.3)
A 		1.2
(-0.8)
A 		0.8
(-3)
A 		1.9
(3)
A 		1
B 0.7
(-2.2)
A 		2
(3)
A 		0.5
(-3)
A 		1
(-1)
A 		2
C 0.5
(-3)
A 		0.5
(-3)
A 		0.7
(-1.7)
A 		1.4
(3)
A 		1
avr 0.8
(-2.1) 		1.2
(1.3) 		0.7
(-3) 		1.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.6
(-2.5)
A 		1.3
(1)
A 		1.7
(3)
A 		0.5
(-3)
A 		1
(-0.5)
A 		1
B 0.5
(-1.8)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.6
(-0.6)
A 		0.9
(3)
A 		0.4
(-3)
A 		1
C 0.5
(-3)
A 		1.2
(3)
A 		0.5
(-3)
A 		0.7
(-1.3)
A 		0.9
(0.4)
A 		0.6
(-2.1)
A 		1
avr 0.5
(-3) 		0.7
(-0.6) 		0.7
(-0.6) 		1
(3) 		0.8
(0.6) 		0.7
(-0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.595
Sequence Type Exemplar sequence
Representative Public ID W04G5.9 NCBI
Target Description W04G5.9 /REP_DB=WormBase Gene ID /WP=CE14598 /TR=O18173 /GB=CAB07685.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060570(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060570 NCBI Caenorhabditis elegans W04G5.9 (W04G5.9) mRNA, complete cds. 10/11 None
SNAP00000044254 ENSEMBL cdna:SNAP chromosome:CEL140:I:11650747:11656550:1 10/11 None
W04G5.9 ENSEMBL cdna:known chromosome:CEL140:I:11652615:11653542:1 gene:W04G5.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11652545-11653473(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G5.9
Entrez Gene 189204 Entrez gene
SwissProt O18173 EMBL-EBI
WormBase CE36214 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07685 Hypothetical protein W04G5.9 [Caenorhabditis elegans] ref|NP_492971.2| W04G5.9 [Caenorhabditis elegans] 6.0E-93
blast CAB07685 Hypothetical protein W04G5.9 [Caenorhabditis elegans] ref|NP_492971.2| W04G5.9 [Caenorhabditis elegans] 7.0E-92
blast CAB07682 Hypothetical protein W04G5.5 [Caenorhabditis elegans] ref|NP_492967.1| W04G5.5 [Caenorhabditis elegans] 2.0E-21
blast AAB37592 Hypothetical protein T20D4.5 [Caenorhabditis elegans] ref|NP_503956.2| T20D4.5 [Caenorhabditis elegans] 1.0E-17
blast CAB57916 Hypothetical protein F56G4.5 [Caenorhabditis elegans] emb|CAB04487.2| Hypothetical protein F56G4.5 [Caenorhabditis elegans] ref|NP_492913.1| F56G4.5 [Caenorhabditis elegans] 4.0E-16
blast AAF74721 PNGase [Caenorhabditis elegans] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.4E-37
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 9.2E-14
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.3E-17
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 1.4E-37
Sequence
Target Sequence 
>C. ELEGANS:177988_AT
tgaagagacaacaacttctccgccgccatttacaacaacagtcactactactacatcagc
tgctagaactattgccacaacaagtaacacctataaaaactgttccaccggttaaagtgt
tcggcaaagcaatcaaaccgataccaacacctggagaaaacatcctcgattttgagtatg
atattgttaaagacaagtactcccaaagtccggaaaatggattattttctcaagtttatg
atgtgaagaacatccgacgtatcagagatactaatacaaatgaggtttattttggcttgg
tcgatggagctgatcatggaactatttcgtggcgctttgataaagatttaaataacaaca
agattggaagagtagatatcgaagttcgagatgatgaagaatatagttacaatggcaaag
caatagcgactttttgcatagctgatgaatgctggatcattcgtagaaactcggttacaa
gtatttacgatacaaaacacggccaaatcaacgtcatattcattttgactggtggcgacg
cac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGAGACAACAACTTCTCCGCCG 448 575 17 Antisense
CGCCGCCATTTACAACAACAGTCAC 355 255 37 Antisense
GTCACTACTACTACATCAGCTGCTA 445 465 57 Antisense
TCAGCTGCTAGAACTATTGCCACAA 523 625 72 Antisense
AATCAAACCGATACCAACACCTGGA 508 169 147 Antisense
GAAGAACATCCGACGTATCAGAGAT 218 339 261 Antisense
GAGGTTTATTTTGGCTTGGTCGATG 280 401 298 Antisense
GGAGCTGATCATGGAACTATTTCGT 341 521 322 Antisense
ACTATTTCGTGGCGCTTTGATAAAG 272 99 337 Antisense
AAACACGGCCAAATCAACGTCATAT 476 129 511 Antisense
TTCATTTTGACTGGTGGCGACGCAC 13 689 535 Antisense
Sequence Source Affymetrix Proprietary Database