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[177986_at]

Description C15C6.4 /REP_DB=WormBase Gene ID /WP=CE18505 /TR=Q9XVT1 /GB=CAB02730.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 88      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 92      6grp_total > 98      4grp_total > 41      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 228.9
(-3)
P 		282.3
(1.7)
P 		259.3
(-0.3)
P 		297.5
(3)
P 		69
B 222.9
(-3)
P 		355
(3)
P 		348.9
(2.7)
P 		236.7
(-2.4)
P 		132
C 222.8
(-3)
P 		338.5
(3)
P 		295.9
(0.8)
P 		285.7
(0.3)
P 		116
avr 224.9
(-3) 		325.3
(3) 		301.4
(1.6) 		273.3
(-0.1) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 166.3
(-3)
P 		234.8
(-1.5)
P 		186.3
(-2.6)
P 		249.5
(-1.2)
P 		372.5
(1.5)
P 		438.5
(3)
P 		272
B 234
(-1.2)
P 		242
(-1)
P 		233
(-1.2)
P 		146.3
(-3)
P 		352.2
(1.2)
P 		437.7
(3)
P 		291
C 177.9
(-3)
P 		200.1
(-2.6)
P 		298
(-0.8)
P 		266.2
(-1.4)
P 		401.7
(1.2)
P 		499.6
(3)
P 		322
avr 192.7
(-3) 		225.6
(-2.3) 		239.1
(-2) 		220.7
(-2.4) 		375.5
(1.1) 		458.6
(3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 83.3
(3)
P 		61.3
(-0.3)
P 		67.8
(0.7)
P 		43.5
(-3)
P 		40
B 71.1
(0.3)
P 		87.7
(3)
P 		80.8
(1.9)
P 		50.4
(-3)
P 		37
C 73.8
(-0.2)
P 		97.3
(2.4)
P 		103.1
(3)
P 		48.2
(-3)
P 		55
avr 76.1
(1.7) 		82.1
(2.7) 		83.9
(3) 		47.4
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 30.7
(-3)
P 		83.5
(0.9)
P 		40.6
(-2.3)
P 		63.3
(-0.6)
P 		112.4
(3)
P 		106.8
(2.6)
P 		82
B 81.4
(-0.9)
P 		80.6
(-1)
P 		56.6
(-2.1)
P 		38.8
(-3)
P 		143.1
(2)
P 		163.2
(3)
P 		124
C 66
(-2.3)
P 		61.1
(-2.6)
P 		75.8
(-1.8)
P 		53.5
(-3)
P 		130
(1)
P 		167.3
(3)
P 		114
avr 59.4
(-2.5) 		75.1
(-1.5) 		57.7
(-2.6) 		51.9
(-3) 		128.5
(1.9) 		145.8
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1014
Sequence Type Exemplar sequence
Representative Public ID C15C6.4 NCBI
Target Description C15C6.4 /REP_DB=WormBase Gene ID /WP=CE18505 /TR=Q9XVT1 /GB=CAB02730.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060682 NCBI Caenorhabditis elegans C15C6.4 (C15C6.4) mRNA, complete cds. 11/11 None
SNAP00000035691 ENSEMBL cdna:SNAP chromosome:CEL140:I:12221252:12223221:1 11/11 None
GENEFINDER00000035693 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12221252:12223221:1 11/11 None
C15C6.4 ENSEMBL cdna:known chromosome:CEL140:I:12221252:12223243:1 gene:C15C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12221182-12223152(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C6.4
Entrez Gene 173100 Entrez gene
SwissProt Q9XVT1 EMBL-EBI
WormBase CE18505 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02730 Hypothetical protein C15C6.4 [Caenorhabditis elegans] ref|NP_493083.1| C15C6.4 [Caenorhabditis elegans] 1.0E-111
blast CAB02730 Hypothetical protein C15C6.4 [Caenorhabditis elegans] ref|NP_493083.1| C15C6.4 [Caenorhabditis elegans] 1.0E-103
blast CAE56215 Hypothetical protein CBG23842 [Caenorhabditis briggsae] 3.0E-89
blast CAE56215 Hypothetical protein CBG23842 [Caenorhabditis briggsae] 3.0E-81
blast XP_701926 PREDICTED: hypothetical protein XP_696834 [Danio rerio] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002730 EMBL-EBI Protein of unknown function UPF0086 1.5E-8
Sequence
Target Sequence 
>C. ELEGANS:177986_AT
agagccaggagaatccacgtctcggggaggaggagatcgtctcggagtcttacatctcga
aaaaaatgtgaccagtcacttcaaaagaaaatccaaaaaaacggaaaaaactaatttgac
acgtggaagactcaccgaagacgacaaaaaagcgttcaaattcgctgatatcgttccaat
gaacacagattggcagaaatatttccgcgaacgactcggaaatcacttttcaagtacgaa
aatcgagaaaactattctaaaatcagattatcatggagctctgctgacaatttggcttgc
cgagaatcccacacagattggaattagcggaatcgtcgttctcgagacacgccacacatt
tcaaatggtcacacaagaggatcgattcgttgtaattccaaagaagggctccgtcttccg
attcatccttggtgatcgtctcttctcactgttcggcgacggaatgcgtactcgaccggc
gtggcgcggcaaaaagccacgtatcaagcgtctgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCCAGGAGAATCCACGTCTCGG 159 71 36 Antisense
AGATCGTCTCGGAGTCTTACATCTC 200 67 69 Antisense
CAAATTCGCTGATATCGTTCCAATG 388 191 192 Antisense
CTCTGCTGACAATTTGGCTTGCCGA 370 229 314 Antisense
TTAGCGGAATCGTCGTTCTCGAGAC 662 681 359 Antisense
GAGACACGCCACACATTTCAAATGG 167 393 379 Antisense
TCCAAAGAAGGGCTCCGTCTTCCGA 203 275 432 Antisense
CCGATTCATCCTTGGTGATCGTCTC 122 265 453 Antisense
TCTTCTCACTGTTCGGCGACGGAAT 191 615 476 Antisense
CGGCGACGGAATGCGTACTCGACCG 197 241 489 Antisense
AAAGCCACGTATCAAGCGTCTGCTG 342 125 528 Antisense
Sequence Source Affymetrix Proprietary Database