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[177985_at]

Description K08C9.6 /REP_DB=WormBase Gene ID /WP=CE21040 /TR=Q9XUT2 /GB=CAB04589.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 33      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.4
(-3)
A 		4.4
(1.8)
A 		4.1
(1.1)
A 		4.9
(3)
A 		3
B 2.5
(-3)
A 		5.4
(2.8)
A 		5.5
(3)
A 		3.1
(-1.8)
A 		3
C 4.4
(0.8)
A 		3.9
(-0.3)
A 		2.7
(-3)
A 		5.4
(3)
A 		3
avr 3.1
(-3) 		4.6
(3) 		4.1
(1) 		4.5
(2.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.3
(-1.9)
A 		4.1
(-2.1)
A 		8.2
(0.7)
A 		11.7
(3)
A 		3.9
(-2.2)
A 		2.7
(-3)
A 		9
B 4.5
(-2)
A 		3.8
(-2.5)
A 		4.3
(-2.2)
A 		11.7
(3)
A 		3.2
(-2.9)
A 		3.1
(-3)
A 		9
C 2.6
(-2.7)
A 		2.7
(-2.5)
A 		4.8
(1.1)
A 		5.9
(3)
A 		2.4
(-3)
A 		3
(-2)
A 		4
avr 3.8
(-2.2) 		3.5
(-2.5) 		5.8
(-0.5) 		9.8
(3) 		3.2
(-2.7) 		2.9
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(0)
A 		1
(1.5)
A 		1.1
(3)
A 		0.7
(-3)
A 		0
B 0.8
(-2)
A 		1.3
(3)
A 		1.3
(3)
A 		0.7
(-3)
A 		1
C 1.5
(3)
A 		1.1
(-1)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1
avr 1.1
(3) 		1.1
(3) 		1.1
(3) 		0.8
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		1.5
(-0.9)
A 		1.8
(-0.1)
A 		3
(3)
A 		1.2
(-1.7)
A 		0.7
(-3)
A 		2
B 1.6
(-1.3)
A 		1.3
(-2.1)
A 		1
(-3)
A 		3.1
(3)
A 		1.3
(-2.1)
A 		1.1
(-2.7)
A 		2
C 1
(0)
A 		0.8
(-3)
A 		1.2
(3)
A 		1.2
(3)
A 		0.8
(-3)
A 		1
(0)
A 		0
avr 1.1
(-2.2) 		1.2
(-1.8) 		1.3
(-1.4) 		2.4
(3) 		1.1
(-2.2) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.456
Sequence Type Exemplar sequence
Representative Public ID K08C9.6 NCBI
Target Description K08C9.6 /REP_DB=WormBase Gene ID /WP=CE21040 /TR=Q9XUT2 /GB=CAB04589.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060537 NCBI Caenorhabditis elegans K08C9.6 (K08C9.6) mRNA, complete cds. 11/11 None
K08C9.6 ENSEMBL cdna:known chromosome:CEL140:I:11506065:11507242:-1 gene:K08C9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013580 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11505995-11507173(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08C9.6
Entrez Gene 187140 Entrez gene
SwissProt Q9XUT2 EMBL-EBI
WormBase CE21040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04589 Hypothetical protein K08C9.6 [Caenorhabditis elegans] ref|NP_492938.1| K08C9.6 [Caenorhabditis elegans] 2.0E-62
Sequence
Target Sequence 
>C. ELEGANS:177985_AT
aacaacgcctacgatggcttcttgccatggatctacggatgcaaagaccgcgatcttgat
ggattcctgttgccaggtatcaacgagaactattggggattttatggaatcttcgagagg
gccattaccggaatcaatactgttcggtatcaaacagaaaccgtagcccgatacctgccg
aacaataatcctgaaaactcagaattttcaccaaactgtgactttgctgagtttcgtatt
agaaaaatcaagttagacacggagagtgtgtgtgcagaaagcggagacgccggaacaaga
aatacaccagcacgcaaaatgcgccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAACGCCTACGATGGCTTCTTGC 701 133 34 Antisense
GCTTCTTGCCATGGATCTACGGATG 492 305 50 Antisense
GACCGCGATCTTGATGGATTCCTGT 256 381 79 Antisense
GGATTCCTGTTGCCAGGTATCAACG 641 507 94 Antisense
GGAATCTTCGAGAGGGCCATTACCG 10 533 139 Antisense
GGGCCATTACCGGAATCAATACTGT 169 491 152 Antisense
AACAGAAACCGTAGCCCGATACCTG 592 133 186 Antisense
GCCCGATACCTGCCGAACAATAATC 254 285 199 Antisense
ACTGTGACTTTGCTGAGTTTCGTAT 705 95 248 Antisense
GTGTGTGCAGAAAGCGGAGACGCCG 264 487 301 Antisense
ACACCAGCACGCAAAATGCGCCAGC 567 109 337 Antisense
Sequence Source Affymetrix Proprietary Database