[Home] | [Total List]

[177983_s_at]

Description K03H1.9 /REP_DB=WormBase Gene ID /WP=CE23851 /TR=Q9U3C2 /GB=CAA82661.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 40.1
(-3)
A 		89
(0.4)
A 		68.1
(-1)
A 		125.3
(3)
A 		85
B 90.4
(0.9)
A 		115.1
(3)
A 		46
(-3)
A 		62.9
(-1.5)
A 		69
C 67.8
(-1.5)
A 		91.9
(3)
A 		70.8
(-0.9)
A 		59.8
(-3)
A 		32
avr 66.1
(-2.3) 		98.7
(3) 		61.6
(-3) 		82.7
(0.4) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 71.5
(-0)
A 		52.7
(-1.3)
A 		26.4
(-3)
A 		43.7
(-1.9)
A 		66.4
(-0.4)
A 		117.6
(3)
A 		91
B 39.3
(-3)
A 		81.9
(2.2)
A 		52.6
(-1.4)
A 		60.3
(-0.4)
A 		47.2
(-2)
A 		88.5
(3)
A 		49
C 81.5
(1)
A 		74.8
(-0.5)
A 		90.4
(3)
A 		79.8
(0.6)
A 		83.5
(1.5)
A 		63.4
(-3)
A 		27
avr 64.1
(-1.6) 		69.8
(-0.6) 		56.5
(-3) 		61.3
(-2.1) 		65.7
(-1.3) 		89.8
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.6
(-3)
A 		19.3
(3)
A 		17.8
(1.1)
A 		18.3
(1.7)
A 		5
B 28.8
(3)
A 		28.4
(2.9)
A 		10.7
(-3)
A 		13.4
(-2.1)
A 		18
C 22.4
(1.5)
A 		26.4
(3)
A 		24.7
(2.4)
A 		10.1
(-3)
A 		16
avr 21.9
(1.4) 		24.7
(3) 		17.7
(-0.9) 		13.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.2
(-1.1)
A 		18.7
(0.4)
A 		5.8
(-3)
A 		11.1
(-1.6)
A 		20
(0.7)
A 		28.6
(3)
A 		23
B 13.7
(-2.7)
A 		27.3
(1.3)
A 		12.8
(-3)
A 		16
(-2)
A 		19.2
(-1.1)
A 		33
(3)
A 		20
C 30.2
(3)
A 		22.8
(-0.1)
A 		23
(-0.1)
A 		16.1
(-3)
A 		27
(1.6)
A 		21.2
(-0.8)
A 		14
avr 19
(-0.8) 		22.9
(0.9) 		13.9
(-3) 		14.4
(-2.8) 		22.1
(0.6) 		27.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177983_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7836
Sequence Type Exemplar sequence
Representative Public ID K03H1.9 NCBI
Target Description K03H1.9 /REP_DB=WormBase Gene ID /WP=CE23851 /TR=Q9U3C2 /GB=CAA82661.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066805 NCBI Caenorhabditis elegans K03H1.9 (K03H1.9) mRNA, complete cds. 11/11 None
SNAP00000019344 ENSEMBL cdna:SNAP chromosome:CEL140:III:9940629:9942148:-1 11/11 None
GENEFINDER00000019354 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9940629:9941290:-1 11/11 None
K03H1.9 ENSEMBL cdna:known chromosome:CEL140:III:9940663:9941356:-1 gene:K03H1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9940683-9941405(-) 83.76 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H1.9
Entrez Gene 176405 Entrez gene
SwissProt Q9U3C2 EMBL-EBI
WormBase CE33530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast S41032 hypothetical protein K03H1.9 - Caenorhabditis elegans 1.0E-69
blast CAA82661 Hypothetical protein K03H1.9 [Caenorhabditis elegans] ref|NP_499206.2| K03H1.9 [Caenorhabditis elegans] 1.0E-51
blast CAA82661 Hypothetical protein K03H1.9 [Caenorhabditis elegans] ref|NP_499206.2| K03H1.9 [Caenorhabditis elegans] 4.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499206.2 1 114-136
K03H1.9 1 114-136
SNAP00000019344 1 182-204
Sequence
Target Sequence 
>C. ELEGANS:177983_S_AT
agaagtccaagctgccacagctgctgcctcgggtgccggacaagcaacaccggaatcttc
aacacaaggcccatcatcaggaaatgcaaaatcgccagctccaccaccagcaccaccgct
atcacctgctccttctccggctccactaccgcctccaccgcctccgccatcccttccacc
accaccggaaaatgctttggcagatgactcaccattctctcctccacgtgacaatgagcg
gccggttccaatcaatccagtgcttgctccaaaattatttgatgacattaactttgattc
ggatggaaaatcagcttacacccaacttggaaatccgaagaaatcaaagagaatcgaacc
agaagcaagcaaaaagtcaaagggaaacaagaaaggagatgagaagaagaagaaaaagaa
gtctctgcagttttattttgctcgtggatgtttatacttcgttttcgtactcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTCCAAGCTGCCACAGCTGCT 345 75 74 Antisense
CCTCGGGTGCCGGACAAGCAACACC 106 267 100 Antisense
AAGCAACACCGGAATCTTCAACACA 636 151 115 Antisense
CTTCAACACAAGGCCCATCATCAGG 437 221 130 Antisense
GGAAATGCAAAATCGCCAGCTCCAC 548 527 153 Antisense
CACCACCACCGGAAAATGCTTTGGC 93 203 250 Antisense
GCTTTGGCAGATGACTCACCATTCT 146 305 267 Antisense
CTCTCCTCCACGTGACAATGAGCGG 664 231 290 Antisense
GTTCCAATCAATCCAGTGCTTGCTC 703 439 318 Antisense
AAAATCAGCTTACACCCAACTTGGA 615 131 380 Antisense
TATACTTCGTTTTCGTACTCTTCAT 204 661 526 Antisense
Sequence Source Affymetrix Proprietary Database