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[177982_at]

Description W03C9.1 /REP_DB=WormBase Gene ID /WP=CE03775 /TR=Q23147 /GB=CAA91358.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 24.8
(-3)
A 		77.3
(0.9)
A 		105.4
(3)
A 		92.8
(2.1)
A 		81
B 88.7
(1.8)
A 		70.1
(-0.5)
A 		49
(-3)
A 		99.1
(3)
A 		50
C 17.3
(-3)
A 		73.6
(-1.2)
A 		45.6
(-2.1)
A 		200.9
(3)
P 		184
avr 43.6
(-3) 		73.7
(-0.9) 		66.7
(-1.4) 		130.9
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 58.2
(-1.9)
A 		26.2
(-2.8)
A 		31.1
(-2.7)
A 		20.6
(-3)
A 		102.5
(-0.5)
A 		218.6
(3)
P 		198
B 62.3
(-1.7)
A 		94
(-0.7)
A 		76.6
(-1.2)
A 		21.6
(-3)
A 		121.7
(0.2)
A 		209.7
(3)
P 		188
C 17.4
(-3)
A 		80
(0.3)
A 		22.1
(-2.8)
A 		27.4
(-2.5)
A 		131.1
(3)
A 		100.9
(1.4)
P 		114
avr 46
(-2.1) 		66.7
(-1.3) 		43.3
(-2.2) 		23.2
(-3) 		118.4
(0.7) 		176.4
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 9
(-3)
A 		16.8
(-0.5)
A 		27.6
(3)
A 		13.6
(-1.5)
A 		19
B 28.3
(3)
A 		17.3
(-0.9)
A 		11.4
(-3)
A 		21.1
(0.4)
A 		17
C 5.7
(-3)
A 		21.2
(0.3)
A 		15.9
(-0.8)
A 		33.9
(3)
P 		28
avr 14.3
(-3) 		18.4
(-0.1) 		18.3
(-0.2) 		22.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 10.7
(-2.3)
A 		9.3
(-2.5)
A 		6.8
(-2.8)
A 		5.2
(-3)
A 		30.9
(0.2)
A 		53.2
(3)
P 		48
B 21.7
(-1.7)
A 		31.3
(-0.9)
A 		18.6
(-1.9)
A 		5.7
(-3)
A 		49.5
(0.6)
A 		78.2
(3)
P 		73
C 6.4
(-2.9)
A 		24.4
(0.1)
A 		5.6
(-3)
A 		5.5
(-3)
A 		42.4
(3)
A 		33.8
(1.6)
P 		37
avr 12.9
(-2.1) 		21.7
(-1) 		10.3
(-2.4) 		5.5
(-3) 		40.9
(1.3) 		55.1
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3667
Sequence Type Exemplar sequence
Representative Public ID W03C9.1 NCBI
Target Description W03C9.1 /REP_DB=WormBase Gene ID /WP=CE03775 /TR=Q23147 /GB=CAA91358.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064146(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064146 NCBI Caenorhabditis elegans W03C9.1 (W03C9.1) mRNA, complete cds. 10/11 None
SNAP00000007572 ENSEMBL cdna:SNAP chromosome:CEL140:II:11960905:11966805:-1 10/11 None
GENEFINDER00000007578 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11960905:11961964:-1 10/11 None
W03C9.1 ENSEMBL cdna:known chromosome:CEL140:II:11960916:11961964:-1 gene:W03C9.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11960912-11961961(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03C9.1
Entrez Gene 174832 Entrez gene
SwissProt Q23147 EMBL-EBI
WormBase CE32947 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91358 Hypothetical protein W03C9.1 [Caenorhabditis elegans] ref|NP_496547.2| W03C9.1 [Caenorhabditis elegans] 1.0E-134
blast CAA91357 Hypothetical protein W03C9.3 [Caenorhabditis elegans] ref|NP_496549.1| RAB family member (rab-7) [Caenorhabditis elegans] emb|CAE73411.1| Hypothetical protein CBG20853 [Caenorhabditis briggsae] 1.0E-108
blast CAA91358 Hypothetical protein W03C9.1 [Caenorhabditis elegans] ref|NP_496547.2| W03C9.1 [Caenorhabditis elegans] 9.0E-81
blast AAU95201 putative Rab7 [Oncometopia nigricans] 3.0E-78
blast CAA91358 Hypothetical protein W03C9.1 [Caenorhabditis elegans] ref|NP_496547.2| W03C9.1 [Caenorhabditis elegans] 6.0E-78
blast CAE73414 Hypothetical protein CBG20856 [Caenorhabditis briggsae] 4.0E-36
blast CAE73414 Hypothetical protein CBG20856 [Caenorhabditis briggsae] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 3.9E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496547.2 1 7-29
W03C9.1 1 7-29
GENEFINDER00000007578 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:177982_AT
gtagcgaacccacgttggattccacacaagaatcgatcactgaggacgacggcaagtgcg
ccccattgagaaccatcccgcgaaattcaaattttccagaacacgagtcacctctcagtg
ataactacaagttcagtgatgacgagaagctcgacggactgcaaattctgccgtctccgc
cgccgaaatacgtggaaaaactgagatctcgtgtgcgacaaactcggcgtggcaagaaga
gcccacaggactactattgcaccgacgaagaagattcgctattcgatgtcccatccctga
agattgacccggcaaccctaaaatcttcccgatcaagcattccgctgaatattcaagact
cccgtttgctccgcctcaaccaagatcgcctcgccttcaaaaaaagccacacagtgtacc
ctcattctgcaatctcgccgcactcgaatcgcatgcatcgttccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGCGAACCCACGTTGGATTCCAC 502 457 299 Antisense
GAACACGAGTCACCTCTCAGTGATA 103 353 397 Antisense
ACGGACTGCAAATTCTGCCGTCTCC 357 95 452 Antisense
ATCTCGTGTGCGACAAACTCGGCGT 256 33 504 Antisense
AAGAGCCCACAGGACTACTATTGCA 383 153 535 Antisense
AAGATTCGCTATTCGATGTCCCATC 3 157 569 Antisense
ATGTCCCATCCCTGAAGATTGACCC 6 49 584 Antisense
AAAATCTTCCCGATCAAGCATTCCG 249 133 618 Antisense
GAATATTCAAGACTCCCGTTTGCTC 483 325 645 Antisense
AAAAGCCACACAGTGTACCCTCATT 666 131 700 Antisense
ACTCGAATCGCATGCATCGTTCCGA 247 99 740 Antisense
Sequence Source Affymetrix Proprietary Database