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[177981_at]

Description Y69H2.1 /REP_DB=WormBase Gene ID /WP=CE22819 /TR=Q9XTT0 /GB=CAB11569.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 93.2
(1)
A 		33.6
(-2.6)
A 		26.1
(-3)
A 		127.2
(3)
A 		101
B 67
(1.7)
A 		35.5
(-0.9)
A 		10.6
(-3)
A 		82.6
(3)
A 		72
C 68
(0.1)
A 		52.3
(-0.9)
A 		20.3
(-3)
A 		113.3
(3)
A 		93
avr 76.1
(0.9) 		40.5
(-1.5) 		19
(-3) 		107.7
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 24.5
(1)
A 		12.7
(-1.9)
A 		8
(-3)
A 		28.6
(1.9)
A 		33
(3)
A 		23.2
(0.6)
A 		25
B 67.7
(3)
A 		28.6
(-0.9)
A 		18.8
(-1.9)
A 		12.5
(-2.5)
A 		17
(-2.1)
A 		7.8
(-3)
A 		60
C 51.7
(1.5)
A 		61.5
(3)
A 		32.9
(-1.4)
A 		22.1
(-3)
A 		28.8
(-2)
A 		23.3
(-2.8)
A 		39
avr 48
(3) 		34.3
(0.3) 		19.9
(-2.6) 		21.1
(-2.4) 		26.3
(-1.4) 		18.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 33.9
(3)
A 		7.3
(-2.9)
A 		6.8
(-3)
A 		18.6
(-0.4)
A 		27
B 21.4
(3)
A 		8.8
(-1)
A 		2.5
(-3)
A 		17.6
(1.8)
A 		19
C 22.5
(3)
A 		15
(0.1)
A 		7.1
(-3)
A 		19.1
(1.7)
A 		15
avr 25.9
(3) 		10.4
(-1.6) 		5.5
(-3) 		18.4
(0.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.5
(-1)
A 		4.5
(-1)
A 		1.7
(-3)
A 		7.3
(1)
A 		10
(3)
A 		5.6
(-0.2)
A 		8
B 23.6
(3)
A 		9.5
(-1.1)
A 		4.6
(-2.5)
A 		3.3
(-2.9)
A 		6.9
(-1.8)
A 		2.9
(-3)
A 		21
C 19.2
(3)
A 		18.8
(2.8)
A 		8.4
(-1.4)
A 		4.4
(-3)
A 		9.3
(-1)
A 		7.8
(-1.6)
A 		15
avr 15.8
(3) 		10.9
(0.3) 		4.9
(-3) 		5
(-2.9) 		8.7
(-0.9) 		5.4
(-2.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13870
Sequence Type Exemplar sequence
Representative Public ID Y69H2.1 NCBI
Target Description Y69H2.1 /REP_DB=WormBase Gene ID /WP=CE22819 /TR=Q9XTT0 /GB=CAB11569.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075236
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002615 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18622787:18637063:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075236 7/11 Cross Hyb Matching Probes None
SNAP00000002594 3/11 Cross Hyb Matching Probes None
Y69H2.1 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18622786-18625116(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11570 Hypothetical protein Y69H2.2 [Caenorhabditis elegans] ref|NP_507638.1| Y69H2.2 [Caenorhabditis elegans] 0.0
blast CAB63408 Hypothetical protein Y69H2.11 [Caenorhabditis elegans] ref|NP_507639.1| Y69H2.11 [Caenorhabditis elegans] 0.0
blast CAB11569 Hypothetical protein Y69H2.1 [Caenorhabditis elegans] ref|NP_507637.2| Y69H2.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.1E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 5.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-5
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 4.1E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002615 8 1326-1348,1360-1382,1408-1430,1437-1454,1474-1496,1524-1541,1556-1578,1591-1613
Sequence
Target Sequence 
>C. ELEGANS:177981_AT
agtatggtacactttaggccacgcccaaaaatgggcggagcctgtagaattcagcccgcc
tatttttggggcgtggctacaaattttcatcttttcttcacactgggacacctggcaatt
ggtgacgtcactattaatgatgtttgtgctcagtggatagcttcacctgacgtttttctg
atttctatgtctttcaacaatacgctgctgatttttgcaattttggcaaatttcacgctg
gttatcgtgcaagttatcgataagttcttgtttaaaaagtgtacatctacaaagcacctg
tctctcaattattcttttgtgattttattgcaaagtgtcactgaatttatattgtcattt
ccgctaacaatgcggcagtggaaagtactcctggcaggtatccgttcagttaactatttc
tgcgcctacgggtacatgttctcgttctcctgcatttttatggtgccactggtcagtatg
atgtgcattccgccgattagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATGGTACACTTTAGGCCACGCC 397 63 544 Antisense
TCAGCCCGCCTATTTTTGGGGCGTG 597 581 594 Antisense
GGGGCGTGGCTACAAATTTTCATCT 518 495 611 Antisense
TTCATCTTTTCTTCACACTGGGACA 277 689 629 Antisense
ATAGCTTCACCTGACGTTTTTCTGA 8 23 700 Antisense
CAAAGCACCTGTCTCTCAATTATTC 180 193 833 Antisense
GTACTCCTGGCAGGTATCCGTTCAG 505 457 928 Antisense
CAGTTAACTATTTCTGCGCCTACGG 501 205 950 Antisense
CGCCTACGGGTACATGTTCTCGTTC 376 243 966 Antisense
TCTCGTTCTCCTGCATTTTTATGGT 425 611 983 Antisense
TATGATGTGCATTCCGCCGATTAGG 548 655 1020 Antisense
Sequence Source Affymetrix Proprietary Database