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[177980_at]

Description T22C1.7 /REP_DB=WormBase Gene ID /WP=CE06495 /TR=Q22667 /GB=CAA99924.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_total > 07      4grp_total > 38      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 282
1 2 3 4 range
A 404.3
(3)
P 		244.6
(-0.4)
P 		122
(-3)
P 		199.2
(-1.4)
P 		282
B 290.2
(3)
P 		193.7
(-1.3)
P 		155.3
(-3)
P 		266.4
(1.9)
P 		135
C 346.8
(3)
P 		197.5
(-1.3)
P 		159
(-2.4)
P 		138.6
(-3)
P 		208
avr 347.1
(3) 		211.9
(-1) 		145.4
(-3) 		201.4
(-1.3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 163.7
(3)
P 		101.6
(-1.4)
P 		99.3
(-1.5)
P 		78.3
(-3)
P 		79.3
(-2.9)
P 		94.8
(-1.8)
P 		85
B 141.7
(3)
P 		122.6
(1.8)
P 		69.9
(-1.7)
P 		101
(0.4)
P 		49.4
(-3)
A 		141.8
(3)
P 		92
C 135.6
(2.7)
P 		84.8
(-1.5)
P 		138.9
(3)
P 		122.7
(1.7)
A 		66.7
(-3)
P 		93.3
(-0.8)
P 		72
avr 147
(3) 		103
(-0.2) 		102.7
(-0.2) 		100.7
(-0.4) 		65.1
(-3) 		110
(0.3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 147.2
(3)
P 		53.1
(-1.8)
P 		31.9
(-2.9)
P 		29.2
(-3)
P 		118
B 92.6
(3)
P 		47.8
(-1.7)
P 		36
(-3)
P 		56.8
(-0.8)
P 		57
C 114.8
(3)
P 		56.8
(-0.8)
P 		55.4
(-0.9)
P 		23.4
(-3)
P 		91
avr 118.2
(3) 		52.6
(-1.8) 		41.1
(-2.7) 		36.5
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 30.2
(0.8)
P 		36.1
(3)
P 		21.6
(-2.4)
P 		19.9
(-3)
P 		23.9
(-1.5)
P 		23.1
(-1.8)
P 		16
B 49.3
(2.4)
P 		40.8
(1)
P 		17
(-3)
P 		26.7
(-1.4)
P 		20.1
(-2.5)
A 		52.9
(3)
P 		36
C 50.2
(3)
P 		25.9
(-2.1)
P 		35.4
(-0.1)
P 		24.7
(-2.3)
A 		21.6
(-3)
P 		31.2
(-1)
P 		29
avr 43.2
(3) 		34.3
(0.5) 		24.7
(-2.2) 		23.8
(-2.5) 		21.9
(-3) 		35.7
(0.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1056
Sequence Type Exemplar sequence
Representative Public ID T22C1.7 NCBI
Target Description T22C1.7 /REP_DB=WormBase Gene ID /WP=CE06495 /TR=Q22667 /GB=CAA99924.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059792(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059792 NCBI Caenorhabditis elegans JunctoPHilin family member (jph-1) (jph-1) mRNA, complete cds. 10/11 None
GENEFINDER00000000066 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7955062:7959670:-1 11/11 None
SNAP00000000051 ENSEMBL cdna:SNAP chromosome:CEL140:I:7955070:7959670:-1 11/11 None
T22C1.7 ENSEMBL cdna:known chromosome:CEL140:I:7954309:7959719:-1 gene:T22C1.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7954541-7959601(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol jph-1
Ensembl T22C1.7
Entrez Gene 266843 Entrez gene
SwissProt Q22667 EMBL-EBI
WormBase CE30566 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634184_A_AT junctophilin dm
DROSGENOME1:152044_AT junctophilin dm
DROSGENOME1:146094_AT junctophilin dm
CHICKEN:GGA.18097.1.S1_S_AT similar to junctophilin type 2 gga
HG-U133_PLUS_2:220385_AT junctophilin 2 hs
HG-U133A:220385_AT junctophilin 2 hs
HG-U133A_2:220385_AT junctophilin 2 hs
HG-U133_PLUS_2:229578_AT junctophilin 2 hs
HG-U133B:229578_AT junctophilin 2 hs
U133_X3P:G9967091_3P_AT junctophilin 2 hs
U133_X3P:HS2.134594.1.A1_3P_AT junctophilin 2 hs
U133_X3P:HS.134933.0.A1_3P_AT junctophilin 2 hs
HG-U133_PLUS_2:1553174_AT junctophilin 2 hs
HG-U95C:60416_AT junctophilin 2 hs
HG-U95E:75628_AT junctophilin 2 hs
HG-U95E:76828_AT junctophilin 2 hs
MOUSE430_2:1455404_AT junctophilin 2 mm
MOE430B:1455404_AT junctophilin 2 mm
MOUSE430A_2:1421453_AT junctophilin 2 mm
MOUSE430_2:1421453_AT junctophilin 2 mm
MOE430A:1421453_AT junctophilin 2 mm
MG-U74BV2:115199_AT junctophilin 2 mm
MU19KSUBB:TC32502_AT Junctophilin 2 (Jph2), mRNA mm
RAE230A:1372159_AT Junctophilin 2 (predicted) rn
RAT230_2:1372159_AT Junctophilin 2 (predicted) rn
RG-U34A:RC_AA799580_AT Junctophilin 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA99924 Hypothetical protein T22C1.7 [Caenorhabditis elegans] ref|NP_492193.2| JunctoPHilin family member (jph-1) [Caenorhabditis elegans] 0.0
blast BAB62876.1 junctophilin [Caenorhabditis elegans] 0.0
blast CAE63730 Hypothetical protein CBG08257 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003409 EMBL-EBI MORN motif 2.8E-4
Pfam IPR003409 EMBL-EBI MORN motif 3.3E-4
Pfam IPR003409 EMBL-EBI MORN motif 9.4E-5
Pfam IPR003409 EMBL-EBI MORN motif 0.092
Pfam IPR003409 EMBL-EBI MORN motif 7.8E-5
Pfam IPR003409 EMBL-EBI MORN motif 4.6E-5
Pfam IPR003409 EMBL-EBI MORN motif 5.8E-7
Pfam IPR003409 EMBL-EBI MORN motif 1.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492193.2 1 716-738
T22C1.7 1 716-738
SNAP00000000051 1 745-767
Sequence
Target Sequence 
>C. ELEGANS:177980_AT
tcgcccatccctcatgagacaggcggatgtcaacgagtcttgtgtacgtttcgttttcat
tgagaaggaagaagatatgaacactcttctcttcttccgctactttgcttcatcttttcg
tgtctatccggcggcaagcgggctcaatcgaaggtcgactcttgcctcggcacgagatcg
aaacggtgatgttaaccatccgggggccattggagccacgcatgcggcaaagttaacagc
agccacatctgatggtgataatatgggtagtcttcccaatttggccgaacttgaaactca
aggggtacggtatactttttggctggagattaaaccggaaattgaaagaaatgtgcgatt
acgaagagaagaagccgcccgtcttgctggtcaacgtcgtcaagaagttctacgcgagaa
tgaggaggctgctcttctgagagcaaatccattgcggcactttttacaaccagcttttag
agcatggctggtccgatggcgtattccaattcttctggcaattgcgaacatctcactttt
aatgctcttttatcatttgctcacttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCCATCCCTCATGAGACAGGCG 372 599 1797 Antisense
AGATATGAACACTCTTCTCTTCTTC 597 65 1869 Antisense
GGCAAGCGGGCTCAATCGAAGGTCG 408 527 1929 Antisense
ACTCTTGCCTCGGCACGAGATCGAA 624 99 1954 Antisense
GTAGTCTTCCCAATTTGGCCGAACT 207 455 2063 Antisense
CGTCTTGCTGGTCAACGTCGTCAAG 53 247 2176 Antisense
GAATGAGGAGGCTGCTCTTCTGAGA 409 331 2214 Antisense
ATTGCGGCACTTTTTACAACCAGCT 156 5 2247 Antisense
GATGGCGTATTCCAATTCTTCTGGC 642 405 2291 Antisense
GGCAATTGCGAACATCTCACTTTTA 51 535 2313 Antisense
GCTCTTTTATCATTTGCTCACTTAC 130 301 2340 Antisense
Sequence Source Affymetrix Proprietary Database