[Home] | [Total List]

[177979_s_at]

Description C36E8.3 /REP_DB=WormBase Gene ID /WP=CE15686 /TR=Q18500 /GB=CAA84646.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 49      6grp_total > 03      4grp_total > 54      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 331.7
(3)
P 		170.5
(-1.1)
P 		213.1
(-0)
P 		95.5
(-3)
A 		236
B 329.5
(3)
P 		185.3
(-1.1)
P 		198.1
(-0.7)
P 		118.4
(-3)
P 		211
C 274
(3)
P 		191.5
(-0.3)
P 		168
(-1.3)
P 		124.5
(-3)
A 		150
avr 311.7
(3) 		182.4
(-0.9) 		193.1
(-0.6) 		112.8
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 183.8
(-0.8)
P 		270
(3)
P 		133
(-3)
P 		223.7
(1)
P 		169.9
(-1.4)
A 		232.8
(1.4)
P 		137
B 205
(2.5)
P 		208.3
(2.9)
P 		166
(-2.2)
P 		209.3
(3)
P 		185.6
(0.1)
P 		159.5
(-3)
P 		50
C 243.5
(3)
P 		230.8
(2)
P 		166.5
(-3)
P 		217.3
(1)
P 		177.8
(-2.1)
P 		178.1
(-2.1)
P 		77
avr 210.8
(1.1) 		236.4
(3) 		155.2
(-3) 		216.8
(1.6) 		177.8
(-1.3) 		190.1
(-0.4) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 120.8
(3)
P 		37
(-1.7)
P 		55.7
(-0.7)
P 		14
(-3)
A 		107
B 105.1
(3)
P 		45.8
(-1.5)
P 		45.9
(-1.4)
P 		25.2
(-3)
P 		80
C 90.7
(3)
P 		55.1
(-0.1)
P 		58.5
(0.2)
P 		21
(-3)
A 		70
avr 105.5
(3) 		46
(-1.2) 		53.4
(-0.7) 		20.1
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 33.9
(-2.6)
P 		96
(3)
P 		29
(-3)
P 		56.7
(-0.5)
P 		51.3
(-1)
A 		56.7
(-0.5)
P 		67
B 71.3
(2.3)
P 		69.3
(2)
P 		40.3
(-3)
P 		55.4
(-0.4)
P 		75.4
(3)
P 		59.5
(0.3)
P 		35
C 90.2
(3)
P 		70.4
(0.5)
P 		42.4
(-3)
P 		43.7
(-2.8)
P 		57.5
(-1.1)
P 		59.6
(-0.8)
P 		48
avr 65.1
(1) 		78.6
(3) 		37.2
(-3) 		51.9
(-0.9) 		61.4
(0.5) 		58.6
(0.1) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177979_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6977
Sequence Type Exemplar sequence
Representative Public ID C36E8.3 NCBI
Target Description C36E8.3 /REP_DB=WormBase Gene ID /WP=CE15686 /TR=Q18500 /GB=CAA84646.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065403 NCBI Caenorhabditis elegans C36E8.3 (C36E8.3) mRNA, complete cds. 11/11 None
SNAP00000019686 ENSEMBL cdna:SNAP chromosome:CEL140:III:4006150:4009407:1 10/11 None
GENEFINDER00000019692 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4006150:4009641:1 10/11 None
C36E8.3.2 ENSEMBL cdna:known chromosome:CEL140:III:4006113:4009935:1 gene:C36E8.3 11/11 None
C36E8.3.1 ENSEMBL cdna:known chromosome:CEL140:III:4006117:4009937:1 gene:C36E8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4006149-4009619(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36E8.3
Entrez Gene 175518 Entrez gene
SwissProt Q18500 EMBL-EBI
WormBase CE30889 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591019_AT similar to plexin domain containing 2 precursor cfa
CANINE_2:CFA.7848.1.A1_AT similar to plexin domain containing 2 precursor cfa
CANINE_2:CFAAFFX.7077.1.S1_AT similar to plexin domain containing 2 precursor cfa
DROSOPHILA_2:1628453_AT dm
DROSGENOME1:154919_AT dm
CHICKEN:GGA.9989.1.S1_AT similar to plexin domain containing 2 precursor; tumor endothelial marker 7-related; 1200007L24Rik gga
HG-U133_PLUS_2:227276_AT plexin domain containing 2 hs
HG-U133B:227276_AT plexin domain containing 2 hs
HU35KSUBA:RC_AA455078_AT plexin domain containing 2 hs
U133_X3P:HS.33033.0.A1_3P_AT plexin domain containing 2 hs
HG-U95B:44610_AT plexin domain containing 2 hs
HG-U133_PLUS_2:242958_X_AT Plexin domain containing 2 hs
HG-U133B:242958_X_AT Plexin domain containing 2 hs
HG-U95C:55086_AT Plexin domain containing 2 hs
HG-U95C:62286_R_AT Plexin domain containing 2 hs
HG-U95D:71535_AT Plexin domain containing 2 hs
U133_X3P:HS.167361.0.A1_3P_AT Plexin domain containing 2 hs
U133_X3P:HS.167361.0.A1_3P_X_AT Plexin domain containing 2 hs
HU35KSUBC:RC_W95106_AT Plexin domain containing 2 hs
HU35KSUBD:RC_AA477409_AT Plexin domain containing 2 hs
HU35KSUBD:RC_R40759_AT Plexin domain containing 2 hs
U133_X3P:242958_3P_X_AT Plexin domain containing 2 hs
MOE430A:1449270_AT plexin domain containing 2 mm
MOUSE430A_2:1449270_AT plexin domain containing 2 mm
MOUSE430_2:1449270_AT plexin domain containing 2 mm
MOUSE430A_2:1418912_AT plexin domain containing 2 mm
MOE430A:1418912_AT plexin domain containing 2 mm
MOUSE430_2:1418912_AT plexin domain containing 2 mm
MG-U74CV2:168125_R_AT plexin domain containing 2 mm
MG-U74CV2:166587_I_AT plexin domain containing 2 mm
MU19KSUBA:TC15958_AT Plexin domain containing 2 (Plxdc2), mRNA mm
RG-U34B:RC_AI029495_AT plexin domain containing 2 (predicted) rn
RG-U34C:RC_AI169322_AT plexin domain containing 2 (predicted) rn
RAE230A:1375945_AT plexin domain containing 2 (predicted) rn
RAT230_2:1375945_AT plexin domain containing 2 (predicted) rn
RAE230B:1396546_AT Plexin domain containing 2 (predicted) rn
RAT230_2:1396546_AT Plexin domain containing 2 (predicted) rn
RG-U34B:RC_AI058426_AT Plexin domain containing 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA84646 Hypothetical protein C36E8.3 [Caenorhabditis elegans] ref|NP_497804.2| C36E8.3 [Caenorhabditis elegans] 0.0
blast CAE60100 Hypothetical protein CBG03632 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497804.2 1 441-463
C36E8.3.2 1 441-463
C36E8.3.1 1 441-463
SNAP00000019686 1 441-463
GENEFINDER00000019692 1 441-463
Sequence
Target Sequence 
>C. ELEGANS:177979_S_AT
aatttgcatcaagcagctgtcccaaaaagagttatttatgaataccatagaattgaaatt
gccgcacagaagattgtatcgaatactgtcgtgatactgaaagcacaaccaacatgtatc
tcattcgacacctgtgacacatgtacaaacgccactctcccccacttcaactgcctctgg
tgtcatgccaagaaatctcatggaggacctttctgcaccgatgaagccggccttcatcgt
cgccgtcagcactggtttgaagggaattgctatcaaagaagtaaagcgctgtattgtgat
gctgatgatgaagatgaaacatatgatgaagaggactatccaaaatctcagttaatgcca
aatggagggcacactgttcttccattggatgctgataaaatgaaaaaaaccgataaaaca
acttcagaggatagtgatgaatggaagggacataagaagaaagaagagccgaagggagga
gttgccactaccgcccatcccgttggcacatcccaagcagccacgttcgctacagtgctt
cagttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTGCATCAAGCAGCTGTCCCAA 121 175 859 Antisense
TGTATCTCATTCGACACCTGTGACA 72 561 973 Antisense
GTGACACATGTACAAACGCCACTCT 321 481 992 Antisense
CTGCCTCTGGTGTCATGCCAAGAAA 108 237 1029 Antisense
ATCTCATGGAGGACCTTTCTGCACC 320 33 1053 Antisense
ACCTTTCTGCACCGATGAAGCCGGC 425 87 1065 Antisense
TCGCCGTCAGCACTGGTTTGAAGGG 333 599 1098 Antisense
CCAAATGGAGGGCACACTGTTCTTC 202 275 1216 Antisense
GCACACTGTTCTTCCATTGGATGCT 15 317 1227 Antisense
AAGAGCCGAAGGGAGGAGTTGCCAC 7 153 1322 Antisense
CGTTCGCTACAGTGCTTCAGTTCAC 335 247 1382 Antisense
Sequence Source Affymetrix Proprietary Database