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[177975_at]

Description F58G1.7 /REP_DB=WormBase Gene ID /WP=CE17927 /TR=O62270 /GB=CAB04519.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_high_8_8 > 28      6grp_total > 06      4grp_total > 28      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 79.6
(-3)
P 		125.6
(3)
P 		81.4
(-2.8)
P 		111.5
(1.2)
P 		46
B 82.5
(1.8)
P 		91.8
(3)
P 		43.4
(-3)
P 		76.5
(1.1)
P 		48
C 83.4
(0.8)
P 		73.2
(-0.3)
P 		48.2
(-3)
P 		104.5
(3)
A 		56
avr 81.8
(0.6) 		96.9
(2.9) 		57.7
(-3) 		97.5
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 228.5
(3)
P 		120.9
(-1)
P 		98.3
(-1.8)
P 		67.3
(-3)
P 		85.4
(-2.3)
P 		89.3
(-2.2)
P 		161
B 203.8
(3)
P 		149.6
(0.8)
P 		77.4
(-2.2)
P 		62
(-2.8)
P 		58.2
(-3)
P 		58.5
(-3)
P 		146
C 191.4
(3)
P 		120.8
(-0.2)
P 		135.4
(0.4)
P 		63.8
(-2.8)
A 		60.5
(-3)
P 		65.2
(-2.8)
P 		131
avr 207.9
(3) 		130.4
(-0.2) 		103.7
(-1.4) 		64.4
(-3) 		68
(-2.8) 		71
(-2.7) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 29
(3)
P 		27.3
(2.2)
P 		21.3
(-0.6)
P 		16.3
(-3)
P 		13
B 26.3
(3)
P 		22.7
(1.7)
P 		10.1
(-3)
P 		16.3
(-0.7)
P 		16
C 27.6
(3)
P 		21.1
(-0.6)
P 		16.8
(-3)
P 		17.6
(-2.6)
A 		11
avr 27.6
(3) 		23.7
(1) 		16.1
(-3) 		16.7
(-2.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 42.1
(2.8)
P 		43
(3)
P 		21.4
(-2)
P 		17.1
(-3)
P 		25.8
(-1)
P 		21.8
(-1.9)
P 		26
B 70.9
(3)
P 		49.8
(0.7)
P 		18.8
(-2.7)
P 		16.4
(-3)
P 		23.6
(-2.2)
P 		21.8
(-2.4)
P 		55
C 70.9
(3)
P 		36.9
(-0.5)
P 		34.5
(-0.8)
P 		12.8
(-3)
A 		19.6
(-2.3)
P 		21.8
(-2.1)
P 		58
avr 61.3
(3) 		43.2
(0.6) 		24.9
(-1.8) 		15.4
(-3) 		23
(-2) 		21.8
(-2.2) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4016
Sequence Type Exemplar sequence
Representative Public ID F58G1.7 NCBI
Target Description F58G1.7 /REP_DB=WormBase Gene ID /WP=CE17927 /TR=O62270 /GB=CAB04519.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064357 NCBI Caenorhabditis elegans F58G1.7 (F58G1.7) mRNA, complete cds. 11/11 None
SNAP00000003694 ENSEMBL cdna:SNAP chromosome:CEL140:II:12944095:12947888:-1 11/11 None
GENEFINDER00000003696 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12944095:12948095:-1 11/11 None
F58G1.7 ENSEMBL cdna:known chromosome:CEL140:II:12943745:12948040:-1 gene:F58G1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12944091-12948037(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G1.7
Entrez Gene 174937 Entrez gene
SwissProt O62270 EMBL-EBI
WormBase CE17927 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04519 Hypothetical protein F58G1.7 [Caenorhabditis elegans] ref|NP_496758.1| F58G1.7 [Caenorhabditis elegans] 0.0
blast CAE59399 Hypothetical protein CBG02762 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496758.1 13 15-36,56-78,83-105,126-148,158-180,187-208,228-247,268-290,310-332,363-385,395-417,424-446,488-510
F58G1.7 13 15-36,56-78,83-105,126-148,158-180,187-208,228-247,268-290,310-332,363-385,395-417,424-446,488-510
SNAP00000003694 12 15-37,44-66,86-108,115-137,147-166,187-209,224-246,274-296,322-344,356-378,382-404,450-469
GENEFINDER00000003696 13 38-60,75-97,104-126,146-168,175-197,207-226,247-269,284-306,334-356,382-404,416-438,442-464,510-529
Sequence
Target Sequence 
>C. ELEGANS:177975_AT
gacgactgctgtggtggttttgacggtggctgctaatttggcacggttgccgatcggtat
acagttgccgactattgtatatgtacttttctcattgttggcaatcatcgcaggtgttac
gatttgtggctactatctaccattttgttctgcaacgggtgctatttcaagtttcctgct
gacaatcattctgaccgctgggaatttatcgatttacctattcaataatgctcctcaaaa
gttccaaaattcgtgtattttggaagatgctgttgggaattctacaattgttcataggtc
actgagcatggaaagagtgctgtactttgtatcacatctcccaccgcagtcccagccaat
tattagtttaatgcttttcatcgtcatttgcacaataatctcatttctatcgggcggtca
agatccgatgggtctcgactggaatttgatcgccttcacctgggcgacgtctgtcaggag
tccatcgagcttctcgaaacgtcaatttgcagtcgcatcggacaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACTGCTGTGGTGGTTTTGACG 352 379 1125 Antisense
GGCTACTATCTACCATTTTGTTCTG 49 539 1252 Antisense
ACGGGTGCTATTTCAAGTTTCCTGC 20 97 1279 Antisense
GTTTCCTGCTGACAATCATTCTGAC 523 451 1295 Antisense
TGCTGTACTTTGTATCACATCTCCC 54 583 1442 Antisense
CCGCAGTCCCAGCCAATTATTAGTT 306 261 1468 Antisense
ATCTCATTTCTATCGGGCGGTCAAG 641 29 1522 Antisense
GTCAAGATCCGATGGGTCTCGACTG 315 463 1541 Antisense
ATTTGATCGCCTTCACCTGGGCGAC 650 15 1568 Antisense
GACGTCTGTCAGGAGTCCATCGAGC 145 377 1590 Antisense
CAATTTGCAGTCGCATCGGACACCG 280 181 1627 Antisense
Sequence Source Affymetrix Proprietary Database