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[177973_at]

Description C06A1.4 /REP_DB=WormBase Gene ID /WP=CE02980 /TR=Q17685 /GB=CAA90054.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 56.3
(-3)
A 		104.5
(2.7)
A 		90.9
(1.1)
A 		106.6
(3)
A 		50
B 71.6
(0.1)
A 		92.7
(3)
A 		70.3
(-0.1)
A 		49.3
(-3)
A 		43
C 77.8
(-2.1)
M 		63.2
(-3)
A 		78.8
(-2)
P 		157.7
(3)
A 		95
avr 68.6
(-3) 		86.8
(0) 		80
(-1.1) 		104.5
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 672
1 2 3 4 5 6 range
A 34.8
(-3)
A 		74.8
(-2.6)
A 		118.4
(-2.2)
P 		186.8
(-1.5)
P 		429.8
(0.8)
P 		660.5
(3)
P 		626
B 63.9
(-3)
A 		83.5
(-2.8)
P 		108.3
(-2.6)
P 		193.4
(-1.8)
P 		338.2
(-0.4)
P 		706.3
(3)
P 		642
C 54.5
(-3)
A 		103.7
(-2.4)
P 		132
(-2.1)
P 		182.6
(-1.5)
P 		348.1
(0.3)
P 		584.5
(3)
P 		530
avr 51.1
(-3) 		87.3
(-2.6) 		119.6
(-2.3) 		187.6
(-1.6) 		372
(0.2) 		650.4
(3) 		599
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.5
(0.6)
A 		22.7
(2.2)
A 		23.8
(3)
A 		15.6
(-3)
A 		8
B 22.8
(3)
A 		22.9
(3)
A 		16.3
(-0.2)
A 		10.5
(-3)
A 		12
C 25.8
(1.9)
M 		18.2
(-3)
A 		27.5
(3)
P 		26.6
(2.4)
A 		9
avr 23
(3) 		21.3
(1.1) 		22.5
(2.4) 		17.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 6.4
(-3)
A 		26.6
(-2.2)
A 		25.8
(-2.2)
P 		47.4
(-1.4)
P 		129.7
(1.8)
P 		160.8
(3)
P 		154
B 22.2
(-3)
A 		27.8
(-2.9)
P 		26.3
(-2.9)
P 		51.2
(-2.3)
P 		137.4
(-0.1)
P 		263.4
(3)
P 		241
C 20.2
(-3)
A 		31.6
(-2.6)
P 		33.6
(-2.5)
P 		36.7
(-2.4)
P 		112.6
(0.2)
P 		195.7
(3)
P 		176
avr 16.3
(-3) 		28.7
(-2.6) 		28.6
(-2.6) 		45.1
(-2.1) 		126.6
(0.5) 		206.6
(3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3476
Sequence Type Exemplar sequence
Representative Public ID C06A1.4 NCBI
Target Description C06A1.4 /REP_DB=WormBase Gene ID /WP=CE02980 /TR=Q17685 /GB=CAA90054.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064350
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000011345 ENSEMBL cdna:SNAP chromosome:CEL140:II:10574753:10578668:-1 11/11 None
GENEFINDER00000011347 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10574753:10578104:-1 11/11 None
C06A1.4 ENSEMBL cdna:pseudogene chromosome:CEL140:II:10574753:10578104:-1 gene:C06A1.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12919470-12922826(+) 92.16 92.16
chrII:10574749-10578101(-) 100.0 100.0
Public Domain and Genome References
Ensembl C06A1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18974 hypothetical protein C06A1.4 - Caenorhabditis elegans 0.0
blast CAB04524 Hypothetical protein F58G1.1 [Caenorhabditis elegans] ref|NP_496751.1| F58G1.1 [Caenorhabditis elegans] 0.0
blast AAF60414 Paz/piwi domain-containing protein 2 [Caenorhabditis elegans] ref|NP_491535.1| PAZ/PIWI domain-containing family member (ppw-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 3.4E-50
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 3.4E-50
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177973_AT
ggcctatgagattcctcttgttcgtgttgccatgagaggtttctcacctgaaattcaact
ggtctacatcgtggtgtcaaaggatcacagcttcagattcttcaagccggatgtgacaag
tctagctgcccgtccacaagcgacttccagcaccgcaagcagacattctgcaatgccagc
cgctccaaaagcatgggatctgaatattgctcccggtattatggtcgattccatcgtgac
aaatccggcctgcaagcaatttttcctgaattcccacatcactctgcaaggaactgcgaa
aactccattgtacacagttctcgccgatgacgccaaagtcagcatgacggcattggagga
tatcacgtacaagctgtgccatcttcaccagattgttggacttccgacgtcgcttccaac
ttcattgtatgtcgccaacgagtacgccaagagaggacgcaatctgtggaacgaggcagt
gaccatggataacattccaagtgttagcggcccggaggcagaccgtctcagagagttgac
cagcatcatctgctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCTATGAGATTCCTCTTGTTCGT 321 543 2235 Antisense
GTTGCCATGAGAGGTTTCTCACCTG 686 439 2260 Antisense
ATTCAACTGGTCTACATCGTGGTGT 662 9 2287 Antisense
CAGATTCTTCAAGCCGGATGTGACA 633 205 2328 Antisense
GGATGTGACAAGTCTAGCTGCCCGT 552 513 2343 Antisense
TGCTCCCGGTATTATGGTCGATTCC 650 579 2442 Antisense
AATCCGGCCTGCAAGCAATTTTTCC 88 169 2476 Antisense
GTCGCTTCCAACTTCATTGTATGTC 204 475 2643 Antisense
GAACGAGGCAGTGACCATGGATAAC 292 347 2703 Antisense
GGAGGCAGACCGTCTCAGAGAGTTG 125 515 2748 Antisense
GAGTTGACCAGCATCATCTGCTACA 557 397 2767 Antisense
Sequence Source Affymetrix Proprietary Database