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[177971_at]

Description C06A1.2 /REP_DB=WormBase Gene ID /WP=CE02115 /TR=Q17683 /GB=CAA90051.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 73      6grp_total > 82      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 387.6
(0.8)
P 		383.1
(0.6)
P 		469.3
(3)
P 		251.2
(-3)
P 		218
B 280.1
(-3)
P 		408.7
(3)
P 		355.9
(0.5)
P 		284.3
(-2.8)
P 		129
C 489.6
(3)
P 		395
(0.1)
P 		413.6
(0.6)
P 		295.6
(-3)
P 		194
avr 385.8
(1.8) 		395.6
(2.2) 		412.9
(3) 		277
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 533
1 2 3 4 5 6 range
A 438.2
(-1.6)
P 		414.3
(-1.9)
P 		449
(-1.5)
P 		520.9
(-0.7)
P 		847.7
(3)
P 		314.9
(-3)
P 		533
B 453.1
(-3)
P 		834.7
(3)
P 		594.8
(-0.8)
P 		564.7
(-1.2)
P 		578.7
(-1)
P 		579.8
(-1)
P 		382
C 463.3
(-1.6)
P 		719.5
(2)
P 		364.9
(-3)
P 		791.2
(3)
P 		493
(-1.2)
P 		580
(0)
P 		426
avr 451.5
(-3) 		656.2
(3) 		469.6
(-2.5) 		625.6
(2.1) 		639.8
(2.5) 		491.6
(-1.8) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 141.1
(3)
P 		83.2
(-0.3)
P 		122.7
(1.9)
P 		36.8
(-3)
P 		104
B 89.3
(1.3)
P 		100.9
(3)
P 		82.5
(0.3)
P 		60.6
(-3)
P 		40
C 162.1
(3)
P 		113.6
(0.4)
P 		144.2
(2)
P 		49.8
(-3)
P 		112
avr 130.8
(3) 		99.2
(0.7) 		116.5
(1.9) 		49.1
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 80.8
(-2.9)
P 		147.3
(-0.6)
P 		97.8
(-2.3)
P 		132.1
(-1.1)
P 		255.8
(3)
P 		76.7
(-3)
P 		179
B 157.7
(-2.4)
P 		277.8
(3)
P 		144.4
(-3)
P 		149.6
(-2.8)
P 		235.1
(1.1)
P 		216.2
(0.2)
P 		133
C 171.7
(0.7)
P 		219.5
(3)
P 		92.9
(-3)
P 		159.1
(0.1)
P 		159.5
(0.2)
P 		194.2
(1.8)
P 		127
avr 136.7
(-1.6) 		214.9
(2.9) 		111.7
(-3) 		146.9
(-1) 		216.8
(3) 		162.4
(-0.1) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3420
Sequence Type Exemplar sequence
Representative Public ID C06A1.2 NCBI
Target Description C06A1.2 /REP_DB=WormBase Gene ID /WP=CE02115 /TR=Q17683 /GB=CAA90051.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063874 NCBI Caenorhabditis elegans C06A1.2 (C06A1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011353 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10568815:10571768:1 11/11 None
C06A1.2 ENSEMBL cdna:known chromosome:CEL140:II:10568815:10571768:1 gene:C06A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10568811-10571765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A1.2
Entrez Gene 182279 Entrez gene
SwissProt Q17683 EMBL-EBI
WormBase CE02115 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90051 Hypothetical protein C06A1.2 [Caenorhabditis elegans] ref|NP_496275.1| C06A1.2 [Caenorhabditis elegans] 1.0E-154
blast CAE59652 Hypothetical protein CBG03066 [Caenorhabditis briggsae] 3.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496275.1 4 7-29,44-66,105-127,196-218
C06A1.2 4 7-29,44-66,105-127,196-218
GENEFINDER00000011353 4 7-29,44-66,105-127,196-218
Sequence
Target Sequence 
>C. ELEGANS:177971_AT
aagagttcagatttccacgatttatcaaaattgttccaaaatctttgaaatttcttgcaa
catcaaatagtcaaagaagctgtttcaaaatttatattcctaattttcttaacctcttcc
caagtgcccttctttttttttctcaaatttccatgtgtgttgttgtttggctagaagagg
aaatgggtaatttgagtaagaacatgctctttttctttctcccgtgctcccccagctcaa
tcttatgtcttttccgttgtgcaagtcactatgacatacctatcataattgctacggttg
aaagtagaatgacactatgtggatggccgacagaatgcactgagctcagctgctgcgagt
cctacatttttaggctttacttgcttatttttaccttcggagtagtcattgttgcaatta
ttgtgagtgctctttggatgctgttcgaattcagaccaaactacagaaatcgtctccgtc
gccaagatactgaggaacaacaccgattggaagagagatcattcgaggaaaccaaatatt
tgcgcagattttcagagctcaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGTTCAGATTTCCACGATTTAT 117 153 221 Antisense
CCCCAGCTCAATCTTATGTCTTTTC 359 261 450 Antisense
ATGTCTTTTCCGTTGTGCAAGTCAC 339 47 465 Antisense
GGATGGCCGACAGAATGCACTGAGC 635 513 541 Antisense
TGCACTGAGCTCAGCTGCTGCGAGT 426 577 556 Antisense
GCTGCGAGTCCTACATTTTTAGGCT 701 295 572 Antisense
TACTTGCTTATTTTTACCTTCGGAG 547 643 598 Antisense
TGAGTGCTCTTTGGATGCTGTTCGA 458 567 644 Antisense
AAACTACAGAAATCGTCTCCGTCGC 212 127 678 Antisense
GTCTCCGTCGCCAAGATACTGAGGA 313 471 692 Antisense
TGCGCAGATTTTCAGAGCTCAACCC 641 583 761 Antisense
Sequence Source Affymetrix Proprietary Database