[Home] | [Total List]

[177970_at]

Description F33H2.6 /REP_DB=WormBase Gene ID /WP=CE17768 /TR=O62216 /GB=CAB04261.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 26      4grp_high_8_8 > 60      6grp_highest_nonorm > 73      6grp_total > 50      4grp_total > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 518
1 2 3 4 range
A 504.4
(2)
P 		314.4
(-1.3)
P 		561.9
(3)
P 		219.5
(-3)
P 		342
B 413.4
(-0.6)
P 		526.9
(2.2)
P 		561.3
(3)
P 		311.6
(-3)
P 		250
C 572.1
(-0)
P 		498.2
(-1.4)
P 		737
(3)
P 		408
(-3)
P 		329
avr 496.6
(0.6) 		446.5
(-0.4) 		620.1
(3) 		313
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 393
1 2 3 4 5 6 range
A 504
(-1.5)
P 		569.3
(-0.5)
P 		796.6
(3)
P 		603.1
(0)
P 		403.9
(-3)
P 		451.2
(-2.3)
P 		393
B 718.6
(3)
P 		616.2
(-0.5)
P 		610.3
(-0.7)
P 		599.1
(-1.1)
P 		542.6
(-3)
P 		638.8
(0.3)
P 		176
C 709.8
(1.9)
P 		500.2
(-1.9)
P 		637.5
(0.6)
P 		772.1
(3)
P 		441.8
(-3)
P 		668.5
(1.1)
P 		330
avr 644.1
(2) 		561.9
(-0.3) 		681.5
(3) 		658.1
(2.4) 		462.8
(-3) 		586.2
(0.4) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 183.7
(3)
P 		68.2
(-1.6)
P 		146.9
(1.5)
P 		32.1
(-3)
P 		152
B 131.8
(3)
P 		130.1
(2.8)
P 		130.1
(2.8)
P 		66.4
(-3)
P 		65
C 189.4
(0.8)
P 		143.2
(-0.6)
P 		256.9
(3)
P 		68.8
(-3)
P 		188
avr 168.3
(2.5) 		113.8
(-0.2) 		178
(3) 		55.8
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 92.9
(-3)
P 		202.5
(3)
P 		173.5
(1.4)
P 		153
(0.3)
P 		121.9
(-1.4)
P 		109.8
(-2.1)
P 		110
B 250.1
(3)
P 		205.1
(0.4)
P 		148.2
(-3)
P 		158.7
(-2.4)
P 		220.4
(1.3)
P 		238.2
(2.3)
P 		102
C 263.1
(3)
P 		152.6
(-2.5)
P 		162.3
(-2)
P 		155.3
(-2.4)
P 		142.9
(-3)
P 		223.8
(1)
P 		120
avr 202
(3) 		186.7
(1) 		161.3
(-2.3) 		155.7
(-3) 		161.7
(-2.2) 		190.6
(1.5) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1533
Sequence Type Exemplar sequence
Representative Public ID F33H2.6 NCBI
Target Description F33H2.6 /REP_DB=WormBase Gene ID /WP=CE17768 /TR=O62216 /GB=CAB04261.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061216(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061216 NCBI Caenorhabditis elegans F33H2.6 (F33H2.6) mRNA, complete cds. 9/11 None
GENEFINDER00000009489 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15013818:15024697:-1 9/11 None
SNAP00000009478 ENSEMBL cdna:SNAP chromosome:CEL140:I:15023040:15024697:-1 9/11 None
F33H2.6 ENSEMBL cdna:known chromosome:CEL140:I:15023021:15024713:-1 gene:F33H2.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15024047-15024628(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33H2.6
Entrez Gene 173369 Entrez gene
SwissProt O62216 EMBL-EBI
WormBase CE30528 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.1769.1.S1_AT similar to CGI-90 protein gga
HU35KSUBC:RC_N92966_AT family with sequence similarity 82, member B hs
HG-U133A:218549_S_AT family with sequence similarity 82, member B hs
HG-U133_PLUS_2:218549_S_AT family with sequence similarity 82, member B hs
HG-U133A_2:218549_S_AT family with sequence similarity 82, member B hs
U133_X3P:G7705802_3P_A_AT family with sequence similarity 82, member B hs
U133_X3P:HS.44222.0.S2_3P_AT family with sequence similarity 82, member B hs
HG-U133_PLUS_2:222665_AT family with sequence similarity 82, member B hs
HG-U133B:222665_AT family with sequence similarity 82, member B hs
HG-U95B:52106_AT family with sequence similarity 82, member B hs
HG-U95B:52107_G_AT family with sequence similarity 82, member B hs
HG-U95B:44277_R_AT Family with sequence similarity 82, member B hs
HG-U95B:45140_AT Family with sequence similarity 82, member B hs
HG-U95C:52184_AT Family with sequence similarity 82, member B hs
HU35KSUBA:RC_AA424789_AT Family with sequence similarity 82, member B hs
HU35KSUBD:RC_AA488861_AT Family with sequence similarity 82, member B hs
MG-U74BV2:163052_AT RIKEN cDNA 2410005O16 gene mm
MOE430A:1438034_AT RIKEN cDNA 2410005O16 gene mm
MOUSE430A_2:1438034_AT RIKEN cDNA 2410005O16 gene mm
MOUSE430_2:1438034_AT RIKEN cDNA 2410005O16 gene mm
MOE430A:1418658_AT RIKEN cDNA 2410005O16 gene mm
MOUSE430A_2:1418658_AT RIKEN cDNA 2410005O16 gene mm
MOUSE430_2:1418658_AT RIKEN cDNA 2410005O16 gene mm
MOE430B:1457017_AT RIKEN cDNA 2410005O16 gene mm
MOUSE430_2:1457017_AT RIKEN cDNA 2410005O16 gene mm
MOE430B:1460155_AT RIKEN cDNA 2410005O16 gene mm
MOUSE430_2:1460155_AT RIKEN cDNA 2410005O16 gene mm
MG-U74BV2:104958_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MG-U74CV2:135887_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MG-U74CV2:136719_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MG-U74CV2:138178_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MOE430B:1443628_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MOUSE430_2:1443628_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MOUSE430_2:1457999_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MOE430B:1457999_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
MU19KSUBC:TC35716_AT RIKEN cDNA 2410005O16 gene, mRNA (cDNA clone MGC:35752 IMAGE:4023319) mm
RAE230A:1389786_AT Similar to RIKEN cDNA 2410005O16 rn
RAT230_2:1389786_AT Similar to RIKEN cDNA 2410005O16 rn
RG-U34C:RC_AI171832_AT Similar to RIKEN cDNA 2410005O16 rn
Protein Similarities
Method ID Description E-Value
blast CAB04263 Hypothetical protein F33H2.5 [Caenorhabditis elegans] ref|NP_493616.1| F33H2.5 [Caenorhabditis elegans] 0.0
blast CAE72571 Hypothetical protein CBG19758 [Caenorhabditis briggsae] 0.0
blast NP_006222 DNA polymerase epsilon catalytic subunit [Homo sapiens] 0.0
blast CAB04261 Hypothetical protein F33H2.6 [Caenorhabditis elegans] ref|NP_493617.2| F33H2.6 [Caenorhabditis elegans] 1.0E-174
blast CAE72542 Hypothetical protein CBG19724 [Caenorhabditis briggsae] 1.0E-133
blast NP_001011297 hypothetical protein LOC496750 [Xenopus tropicalis] gb|AAH88015.1| Hypothetical LOC496750 [Xenopus tropicalis] 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR006133 EMBL-EBI DNA polymerase B, exonuclease domain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177970_AT
gttcaaacgagtattcaatctccgttttatttcgaatttctctcgccgcccgacatcttc
tccaaaacttccgaaattaattgcaatcactggtggaacctcgcttggaatcgcattttt
tggaaaaactgaagagaacaagaatttggactcaggaaatggacaattaattgatggaaa
accgaaaaatttcgatttaattgttcgaaattcggatgaactttatgataattatctaat
cgataattgttataatattttgaaaaaatttgaaaattccaattgctccgagcttctatg
gcgtctggcacgtgtggtttgtgagaaaggaaaactctcaaaagatcaaaatcaacgaaa
agagctcattttggaagcctatggaattgtgaaaaaagctcttgacaatgagccaaagaa
tggatgctttggagcacataaatggtacgatttggagttaaaacgctatttattccgggt
agaacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAACGAGTATTCAATCTCCGT 329 443 15 Antisense
GTATTCAATCTCCGTTTTATTTCGA 615 451 25 Antisense
TTTTATTTCGAATTTCTCTCGCCGC 534 675 39 Antisense
GCAATCACTGGTGGAACCTCGCTTG 75 321 97 Antisense
GAACCTCGCTTGGAATCGCATTTTT 134 347 110 Antisense
TTTGAAAATTCCAATTGCTCCGAGC 246 667 283 Antisense
CAATTGCTCCGAGCTTCTATGGCGT 656 179 294 Antisense
GCGTCTGGCACGTGTGGTTTGTGAG 49 293 315 Antisense
AGAGCTCATTTTGGAAGCCTATGGA 37 69 375 Antisense
ATGCTTTGGAGCACATAAATGGTAC 216 43 438 Antisense
GCTATTTATTCCGGGTAGAACAACA 367 301 479 Antisense
Sequence Source Affymetrix Proprietary Database