[Home] | [Total List]

[177969_at]

Description C14B1.6 /REP_DB=WormBase Gene ID /WP=CE17402 /TR=Q17968 /GB=CAA85492.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 83      6grp_total > 87      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 536
(3)
P 		223.7
(-3)
P 		268.8
(-2.1)
P 		358.2
(-0.4)
P 		312
B 507.4
(3)
P 		303.4
(-0.8)
P 		189.3
(-3)
P 		372.9
(0.5)
P 		318
C 557.1
(3)
P 		307.9
(-2.6)
P 		289.4
(-3)
P 		420.8
(-0.1)
P 		268
avr 533.5
(3) 		278.3
(-2.4) 		249.2
(-3) 		384
(-0.2) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 463.8
(-1.6)
P 		415.9
(-3)
P 		441.2
(-2.3)
P 		447.6
(-2.1)
P 		535.3
(0.5)
P 		620.8
(3)
P 		205
B 514.9
(1.2)
P 		491.1
(0.7)
P 		308.5
(-3)
P 		538.8
(1.6)
P 		491.5
(0.7)
P 		606.5
(3)
P 		298
C 410.3
(-3)
P 		437
(-1.9)
P 		481.1
(-0)
P 		548.9
(2.8)
P 		423.4
(-2.5)
P 		554.1
(3)
P 		144
avr 463
(-1.3) 		448
(-1.8) 		410.3
(-3) 		511.8
(0.3) 		483.4
(-0.6) 		593.8
(3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 195.2
(3)
P 		48.6
(-3)
P 		70.3
(-2.1)
P 		52.4
(-2.8)
P 		147
B 161.8
(3)
P 		74.9
(-1.4)
P 		43.9
(-3)
P 		79.5
(-1.2)
P 		118
C 184.4
(3)
P 		88.5
(-2.1)
P 		100.9
(-1.4)
P 		70.9
(-3)
P 		114
avr 180.5
(3) 		70.7
(-2.8) 		71.7
(-2.8) 		67.6
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 85.5
(-3)
P 		147.9
(1.9)
P 		96.1
(-2.2)
P 		113.5
(-0.8)
P 		161.5
(3)
P 		151.1
(2.2)
P 		76
B 179.2
(1.1)
P 		163.5
(0.5)
P 		74.9
(-3)
P 		142.7
(-0.3)
P 		199.7
(1.9)
P 		226.2
(3)
P 		151
C 152.1
(0.3)
P 		133.3
(-1.2)
P 		122.4
(-2)
P 		110.4
(-3)
P 		137
(-0.9)
P 		185.5
(3)
P 		75
avr 138.9
(-0.3) 		148.2
(0.4) 		97.8
(-3) 		122.2
(-1.4) 		166.1
(1.6) 		187.6
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6505
Sequence Type Exemplar sequence
Representative Public ID C14B1.6 NCBI
Target Description C14B1.6 /REP_DB=WormBase Gene ID /WP=CE17402 /TR=Q17968 /GB=CAA85492.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065351 NCBI Caenorhabditis elegans C14B1.6 (C14B1.6) mRNA, complete cds. 11/11 None
SNAP00000040963 ENSEMBL cdna:SNAP chromosome:CEL140:III:3713131:3718572:1 11/11 None
GENEFINDER00000040975 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3713131:3718572:1 11/11 None
C14B1.6 ENSEMBL cdna:known chromosome:CEL140:III:3713467:3718702:1 gene:C14B1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3713130-3718572(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14B1.6
Entrez Gene 175477 Entrez gene
SwissProt Q17968 EMBL-EBI
WormBase CE31415 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16462 pyrophosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85492 Hypothetical protein C14B1.6 [Caenorhabditis elegans] ref|NP_497752.2| C14B1.6 [Caenorhabditis elegans] 0.0
blast CAE64484 Hypothetical protein CBG09209 [Caenorhabditis briggsae] 2.0E-75
blast CAE56500 Hypothetical protein CBG24218 [Caenorhabditis briggsae] 2.0E-72
blast CAE56500 Hypothetical protein CBG24218 [Caenorhabditis briggsae] 5.0E-71
Sequence
Target Sequence 
>C. ELEGANS:177969_AT
ggtgtccttctacttactgattggcgtcttgtacatctcttcgacaatactgcgatcgtc
aatgcaatcattcactattttccaacaaatcttggcggtgtctttttcgaagcaatgacc
gaatacctaaccgagctgcttctcgacaatacaatcgaatttcacacgattatttttgct
ttcggtggaactccgacattcaaaaaacaggatttcttggcattctggaagaagctgatc
gttcgcacgacacaatccatcgatgttttctggatggctcaagactggtgcgatggcctg
aactctactcaagaagaaatcgatcagctcaacgaattcaatcattatgtcgaacaaatg
ttcacaatgatgagaaagaatggaaatataaactacaattattgtgatattcggaaacaa
tacaacattccatctttggatccgagcttcaatcgtccaaatgacttcttgctccttgag
cctatttatcgtgcctacatcaatcacttcgtcgatgaatgcaattgttatctgaaaggc
ccgtttgttaagtgtcagcctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTCCTTCTACTTACTGATTGGC 514 499 1909 Antisense
TGATTGGCGTCTTGTACATCTCTTC 545 563 1926 Antisense
ATCTTGGCGGTGTCTTTTTCGAAGC 345 31 1997 Antisense
TGACCGAATACCTAACCGAGCTGCT 234 569 2024 Antisense
GCTGATCGTTCGCACGACACAATCC 97 297 2142 Antisense
AAGACTGGTGCGATGGCCTGAACTC 70 151 2189 Antisense
GGATCCGAGCTTCAATCGTCCAAAT 451 513 2346 Antisense
TCCAAATGACTTCTTGCTCCTTGAG 706 587 2364 Antisense
GCTCCTTGAGCCTATTTATCGTGCC 62 299 2379 Antisense
TGCCTACATCAATCACTTCGTCGAT 241 585 2400 Antisense
GCCCGTTTGTTAAGTGTCAGCCTAG 116 287 2447 Antisense
Sequence Source Affymetrix Proprietary Database