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[177968_at]

Description F58G1.8 /REP_DB=WormBase Gene ID /WP=CE17928 /TR=O62278 /GB=CAB04527.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.3
(-2.2)
A 		3.2
(-3)
A 		6
(-1.9)
A 		18.7
(3)
A 		16
B 6.9
(1.5)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		9
(3)
A 		8
C 1.4
(-3)
A 		15.1
(3)
A 		3.2
(-2.2)
A 		12.4
(1.8)
A 		14
avr 4.5
(-2.3) 		6.3
(-1.2) 		3.3
(-3) 		13.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-1.6)
A 		1.1
(-2.6)
A 		6.1
(3)
A 		1
(-2.7)
A 		1
(-2.7)
A 		0.7
(-3)
A 		5
B 0.8
(-2.5)
A 		1.3
(-1.4)
A 		0.6
(-3)
A 		1
(-2.1)
A 		0.7
(-2.8)
A 		3.2
(3)
A 		3
C 14.3
(3)
A 		6.2
(-0.7)
A 		1
(-3)
A 		1.1
(-3)
A 		1.8
(-2.6)
A 		1.3
(-2.9)
A 		13
avr 5.7
(3) 		2.9
(-0.6) 		2.6
(-1) 		1
(-3) 		1.2
(-2.7) 		1.7
(-2.1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.9
(0.6)
A 		0.7
(-3)
A 		1.6
(-0.3)
A 		2.7
(3)
A 		2
B 2.2
(3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1.9
(2.1)
A 		2
C 0.5
(-3)
A 		4.3
(3)
A 		1.1
(-2.1)
A 		2.1
(-0.5)
A 		4
avr 1.5
(-0.5) 		1.7
(0.5) 		1
(-3) 		2.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-1.9)
A 		0.4
(-1.9)
A 		1.3
(3)
A 		0.3
(-2.5)
A 		0.3
(-2.5)
A 		0.2
(-3)
A 		1
B 0.3
(-2.4)
A 		0.4
(-1.8)
A 		0.2
(-3)
A 		0.3
(-2.4)
A 		0.3
(-2.4)
A 		1.2
(3)
A 		1
C 5.3
(3)
A 		1.9
(-1)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.6
(-2.5)
A 		0.4
(-2.8)
A 		5
avr 2
(3) 		0.9
(-0.9) 		0.6
(-1.9) 		0.3
(-3) 		0.4
(-2.6) 		0.6
(-1.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3334
Sequence Type Exemplar sequence
Representative Public ID F58G1.8 NCBI
Target Description F58G1.8 /REP_DB=WormBase Gene ID /WP=CE17928 /TR=O62278 /GB=CAB04527.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064352 NCBI Caenorhabditis elegans F58G1.8 (F58G1.8) mRNA, complete cds. 11/11 None
SNAP00000003688 ENSEMBL cdna:SNAP chromosome:CEL140:II:12925201:12925472:-1 10/11 None
F58G1.8 ENSEMBL cdna:known chromosome:CEL140:II:12925201:12925499:-1 gene:F58G1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12925197-12925496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G1.8
Entrez Gene 186541 Entrez gene
SwissProt O62278 EMBL-EBI
WormBase CE17928 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04527 Hypothetical protein F58G1.8 [Caenorhabditis elegans] ref|NP_496753.1| F58G1.8 [Caenorhabditis elegans] 2.0E-40
blast CAB04527 Hypothetical protein F58G1.8 [Caenorhabditis elegans] ref|NP_496753.1| F58G1.8 [Caenorhabditis elegans] 5.0E-35
blast CAE59414 Hypothetical protein CBG02783 [Caenorhabditis briggsae] 2.0E-21
blast CAB04216 Hypothetical protein F29C12.4 [Caenorhabditis elegans] ref|NP_496787.1| F29C12.4 [Caenorhabditis elegans] sp|Q9XV52|EFGM_CAEEL Probable elongation factor G, mitochondrial precursor (mEF-G) 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:177968_AT
tatgctggagatatctgtacaacttttggacttgactgccagagaaacgttctcaactga
tcagaatcttgctccgcattgtgagccaatacacattccggagccagccatttctgtggc
actcaaatctgttaaccggaaagatgctgacaattttatcaaggcattgacgcgattcac
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCTGGAGATATCTGTACAACTT 358 657 39 Antisense
TATCTGTACAACTTTTGGACTTGAC 132 659 50 Antisense
GACTTGACTGCCAGAGAAACGTTCT 408 371 67 Antisense
GAAACGTTCTCAACTGATCAGAATC 96 359 82 Antisense
GTTCTCAACTGATCAGAATCTTGCT 219 443 87 Antisense
GTGAGCCAATACACATTCCGGAGCC 600 481 119 Antisense
GCCAGCCATTTCTGTGGCACTCAAA 42 281 141 Antisense
GTGGCACTCAAATCTGTTAACCGGA 500 491 154 Antisense
GTTAACCGGAAAGATGCTGACAATT 456 439 169 Antisense
AGATGCTGACAATTTTATCAAGGCA 418 65 180 Antisense
ATCAAGGCATTGACGCGATTCACAA 327 27 196 Antisense
Sequence Source Affymetrix Proprietary Database