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[177967_at]

Description F02H6.7 /REP_DB=WormBase Gene ID /WP=CE17631 /TR=O62135 /GB=CAB05175.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 01      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 38.6
(3)
A 		22
(-1.9)
A 		22.7
(-1.7)
A 		18.2
(-3)
A 		20
B 8.4
(-2.8)
A 		10.3
(-2.5)
A 		6.6
(-3)
A 		50.5
(3)
A 		44
C 16.8
(-3)
A 		19.1
(-2.7)
A 		40.4
(-0.1)
A 		66
(3)
A 		49
avr 21.3
(-2.1) 		17.1
(-3) 		23.2
(-1.7) 		44.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 7.9
(-2.3)
A 		13
(-1.1)
A 		14.3
(-0.8)
A 		31
(3)
A 		23.7
(1.3)
A 		4.6
(-3)
A 		26
B 18.9
(-1.5)
A 		6.8
(-2.7)
A 		25.3
(-0.8)
A 		63.4
(3)
A 		29.2
(-0.4)
A 		3.9
(-3)
A 		60
C 3.2
(-3)
A 		10.3
(-1.7)
A 		14.4
(-0.9)
A 		34.8
(3)
A 		7.6
(-2.2)
A 		8.9
(-1.9)
A 		32
avr 10
(-2.3) 		10
(-2.3) 		18
(-1) 		43.1
(3) 		20.2
(-0.7) 		5.8
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.1
(3)
A 		4.8
(-1.9)
A 		5.9
(-1.3)
A 		2.7
(-3)
A 		11
B 2.7
(-2.2)
A 		2.6
(-2.3)
A 		1.5
(-3)
A 		10.8
(3)
A 		9
C 5.5
(-3)
A 		5.5
(-3)
A 		14.1
(3)
A 		11.1
(0.9)
A 		9
avr 7.4
(1.8) 		4.3
(-3) 		7.2
(1.5) 		8.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.5
(-2.6)
A 		4.6
(0.1)
A 		3.1
(-1.2)
A 		7.9
(3)
A 		7.2
(2.4)
A 		1.1
(-3)
A 		7
B 6.6
(-1)
A 		2.3
(-2.7)
A 		6.1
(-1.2)
A 		16.8
(3)
A 		11.9
(1.1)
A 		1.5
(-3)
A 		15
C 1.2
(-3)
A 		3.1
(-1)
A 		3.7
(-0.4)
A 		7
(3)
A 		2.5
(-1.7)
A 		3
(-1.1)
A 		6
avr 3.1
(-2.2) 		3.3
(-2) 		4.3
(-1.3) 		10.6
(3) 		7.2
(0.7) 		1.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9342
Sequence Type Exemplar sequence
Representative Public ID F02H6.7 NCBI
Target Description F02H6.7 /REP_DB=WormBase Gene ID /WP=CE17631 /TR=O62135 /GB=CAB05175.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070329 NCBI Caenorhabditis elegans F02H6.7 (F02H6.7) mRNA, complete cds. 11/11 None
SNAP00000026627 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14225887:14228627:-1 11/11 None
GENEFINDER00000026630 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14225887:14230322:-1 11/11 None
F02H6.7 ENSEMBL cdna:known chromosome:CEL140:IV:14225887:14228627:-1 gene:F02H6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14225892-14228633(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02H6.7
Entrez Gene 184105 Entrez gene
SwissProt O62135 EMBL-EBI
WormBase CE17631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05175 Hypothetical protein F02H6.7 [Caenorhabditis elegans] ref|NP_502730.1| F02H6.7 [Caenorhabditis elegans] 0.0
blast CAB05175 Hypothetical protein F02H6.7 [Caenorhabditis elegans] ref|NP_502730.1| F02H6.7 [Caenorhabditis elegans] 1.0E-146
blast CAB05174 Hypothetical protein F02H6.6 [Caenorhabditis elegans] ref|NP_502731.1| F02H6.6 [Caenorhabditis elegans] 1.0E-123
blast CAB05174 Hypothetical protein F02H6.6 [Caenorhabditis elegans] ref|NP_502731.1| F02H6.6 [Caenorhabditis elegans] 1.0E-116
blast CAB57909 Hypothetical protein Y64G10A.1 [Caenorhabditis elegans] ref|NP_502732.1| Y64G10A.1 [Caenorhabditis elegans] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:177967_AT
ggtgcaccatgttgcattggtactccaaaagtgatcaataactggtatcactgtggaagc
aactctcaaaatgctgccccaactcaaccatgttgccctgttggaggagtttggacagaa
tggacccgatgggctcataacggagcaaatgttgagtggagccgtagtcgagattgtatt
tctggtggatacaattgtgcatgtatcggggaaaatcaggagactaaatttgaatgccca
tgcactccaatgaaaccgattcctcccacaaataccgactgctcaagtctcacaaatcga
attccttacttgaaaactccagcttttgacaaaggaaattgcattgccactgtttatttg
gaagcttccaattttcgtgaatcattctactcgtacaactataaattggaaaaagattca
gctgttgctggctggattgataaagctggaaactgtgaaattgcagattttccgacagga
tttcaagatggacatggtgcatacactccgtttagttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCACCATGTTGCATTGGTACTC 325 501 391 Antisense
GGTATCACTGTGGAAGCAACTCTCA 557 505 434 Antisense
CCAACTCAACCATGTTGCCCTGTTG 655 275 469 Antisense
GAATGGACCCGATGGGCTCATAACG 57 333 508 Antisense
ATTTGAATGCCCATGCACTCCAATG 493 15 618 Antisense
TGCACTCCAATGAAACCGATTCCTC 258 577 631 Antisense
AATACCGACTGCTCAAGTCTCACAA 176 173 661 Antisense
GTCTCACAAATCGAATTCCTTACTT 450 469 677 Antisense
GGAAGCTTCCAATTTTCGTGAATCA 98 531 750 Antisense
GTGAATCATTCTACTCGTACAACTA 279 481 767 Antisense
GGTGCATACACTCCGTTTAGTTTTC 481 501 886 Antisense
Sequence Source Affymetrix Proprietary Database