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[177966_s_at]

Description Y41E3.1 /REP_DB=WormBase Gene ID /WP=CE18369 /TR=O62436 /GB=CAB09003.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 66      6grp_total > 74      4grp_total > 54      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 1327.6
(3)
P 		1035.8
(0)
P 		988.3
(-0.4)
P 		736.7
(-3)
P 		591
B 1244
(3)
P 		1112.7
(0.6)
P 		978.1
(-2)
P 		922.1
(-3)
P 		322
C 1268.9
(3)
P 		957.7
(-1.6)
P 		1000.2
(-0.9)
P 		859.7
(-3)
P 		409
avr 1280.2
(3) 		1035.4
(-0.3) 		988.9
(-1) 		839.5
(-3) 		441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 690
1 2 3 4 5 6 range
A 1114.8
(-2.3)
P 		1249.1
(-1.2)
P 		1039
(-3)
P 		1633.3
(2.2)
P 		1307.9
(-0.7)
P 		1728.5
(3)
P 		690
B 1341.1
(0.2)
P 		1225.8
(-1.5)
P 		1474.9
(2.2)
P 		1525.5
(3)
P 		1288
(-0.6)
P 		1129
(-3)
P 		397
C 1237.8
(-1.6)
P 		1109.8
(-3)
P 		1675.6
(3)
P 		1502.4
(1.2)
P 		1291.1
(-1.1)
P 		1376.1
(-0.2)
P 		566
avr 1231.2
(-2.4) 		1194.9
(-3) 		1396.5
(0.4) 		1553.7
(3) 		1295.7
(-1.3) 		1411.2
(0.6) 		359
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 483.4
(3)
P 		224.9
(-1.1)
P 		258.4
(-0.6)
P 		107.8
(-3)
P 		376
B 396.7
(3)
P 		274.8
(-0.7)
P 		226.6
(-2.1)
P 		196.5
(-3)
P 		200
C 420
(3)
P 		275.3
(-0.2)
P 		348.6
(1.4)
P 		145
(-3)
P 		275
avr 433.4
(3) 		258.3
(-0.7) 		277.9
(-0.3) 		149.8
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 205.5
(-3)
P 		444.2
(3)
P 		226.3
(-2.5)
P 		414.2
(2.2)
P 		394.7
(1.8)
P 		420.8
(2.4)
P 		239
B 466.6
(0.9)
P 		408
(-1.2)
P 		358.2
(-3)
P 		404
(-1.3)
P 		523.3
(3)
P 		421
(-0.7)
P 		165
C 458.8
(2.9)
P 		338.6
(-1.6)
P 		426.5
(1.7)
P 		302.1
(-3)
P 		417.8
(1.4)
P 		460.7
(3)
P 		159
avr 377
(-0.8) 		396.9
(0.3) 		337
(-3) 		373.4
(-1) 		445.3
(3) 		434.2
(2.4) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177966_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8667
Sequence Type Exemplar sequence
Representative Public ID Y41E3.1 NCBI
Target Description Y41E3.1 /REP_DB=WormBase Gene ID /WP=CE18369 /TR=O62436 /GB=CAB09003.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070406 NCBI Caenorhabditis elegans Y41E3.1 (Y41E3.1) mRNA, complete cds. 11/11 None
SNAP00000001433 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14954384:14958836:-1 11/11 None
GENEFINDER00000001471 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14954384:14958836:-1 11/11 None
Y41E3.1 ENSEMBL cdna:known chromosome:CEL140:IV:14954179:14958876:-1 gene:Y41E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14954389-14958842(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.1
Entrez Gene 178413 Entrez gene
SwissProt O62436 EMBL-EBI
WormBase CE32966 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626240_S_AT dm
DROSGENOME1:141477_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB09003 Hypothetical protein Y41E3.1 [Caenorhabditis elegans] ref|NP_502807.2| Y41E3.1 [Caenorhabditis elegans] 0.0
blast CAE68136 Hypothetical protein CBG13784 [Caenorhabditis briggsae] 0.0
blast CAE68122 Hypothetical protein CBG13765 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502807.2 1 13-32
Y41E3.1 1 13-32
SNAP00000001433 1 13-32
GENEFINDER00000001471 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:177966_S_AT
gctatctgtgtttaaaccgattcccgttgatcgaacgtgctctcaagcgggtattgaacc
tcattggtgtacttgtttatcatggaaagatgctatggatactggcgaagatcggaagtt
gactagaagaatcgcaaatgccgttgttcgtgagattaacaaggaaattgtggcggaaaa
ggatctgtgtgctccattgagtctcgcaaagattatcgacgcgaaaaagtacaatttttt
gctgaaatttctagaaaaaaaaatccaaaaaaaagcacgattttccggaaatttcatgtt
ttttcccgaaaaaattcgaaaaaaacttctccccgacaaaggcctactcgcctacaaaaa
cgtgaaagatgccgatggttttgtgcctgacctctcaggttccacgaaagccgcattcgc
tcattatcaactgaagctgcagacaactcccggagaagcgatctacgaagttaccctgtt
ctacgatattgtacgagatgaggtgaagctggattttggatcaatgagccacgtgaacaa
gtttggcgacactccgcattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATCTGTGTTTAAACCGATTCCC 388 303 1539 Antisense
ACCGATTCCCGTTGATCGAACGTGC 364 89 1554 Antisense
TCGAACGTGCTCTCAAGCGGGTATT 632 599 1569 Antisense
AATCGCAAATGCCGTTGTTCGTGAG 464 167 1668 Antisense
TGTGTGCTCCATTGAGTCTCGCAAA 469 555 1724 Antisense
GACAAAGGCCTACTCGCCTACAAAA 654 361 1873 Antisense
GAAAGCCGCATTCGCTCATTATCAA 237 359 1944 Antisense
GCTGCAGACAACTCCCGGAGAAGCG 126 297 1974 Antisense
GAAGCGATCTACGAAGTTACCCTGT 28 339 1993 Antisense
AAGTTACCCTGTTCTACGATATTGT 231 157 2006 Antisense
CAAGTTTGGCGACACTCCGCATTGT 254 185 2076 Antisense
Sequence Source Affymetrix Proprietary Database