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[177964_at]

Description F37A8.1 /REP_DB=WormBase Gene ID /WP=CE00986 /TR=Q20111 /GB=CAA84662.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13
(3)
A 		12.4
(2.6)
A 		7.2
(-0.8)
A 		3.8
(-3)
A 		9
B 2.7
(-3)
A 		6.1
(-1.8)
A 		4.7
(-2.3)
A 		19.5
(3)
A 		17
C 8
(-0.9)
A 		14.2
(3)
A 		8.1
(-0.8)
A 		4.6
(-3)
A 		10
avr 7.9
(-1.3) 		10.9
(3) 		6.7
(-3) 		9.3
(0.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 9.5
(-2.6)
A 		3.8
(-3)
A 		7.8
(-2.7)
A 		19.2
(-2)
A 		63.6
(0.8)
A 		97.9
(3)
A 		94
B 7.7
(-3)
A 		7.9
(-3)
A 		7.3
(-3)
A 		12.9
(-2.7)
A 		40.4
(-1.1)
A 		113.4
(3)
A 		106
C 11.1
(-2.5)
A 		10.4
(-2.5)
A 		2.5
(-3)
A 		16.6
(-2.1)
A 		62.1
(0.6)
A 		100.8
(3)
A 		98
avr 9.4
(-2.8) 		7.4
(-2.9) 		5.9
(-3) 		16.2
(-2.4) 		55.4
(0) 		104
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.7
(3)
A 		2.7
(0.1)
A 		1.9
(-1.1)
A 		0.6
(-3)
A 		4
B 0.9
(-3)
A 		1.5
(-1.9)
A 		1.1
(-2.6)
A 		4.2
(3)
A 		3
C 2.7
(0.5)
A 		4.1
(3)
A 		2.8
(0.6)
A 		0.8
(-3)
A 		3
avr 2.8
(3) 		2.8
(3) 		1.9
(-3) 		1.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		1.3
(-3)
A 		1.7
(-2.9)
A 		4.9
(-2)
A 		19.2
(1.8)
A 		23.8
(3)
A 		23
B 2.7
(-2.9)
A 		2.6
(-2.9)
A 		1.8
(-3)
A 		3.4
(-2.8)
A 		16.4
(-0.8)
A 		42.3
(3)
A 		41
C 4.1
(-2.4)
A 		3.2
(-2.5)
A 		0.6
(-3)
A 		3.3
(-2.5)
A 		20.1
(0.5)
A 		33.7
(3)
A 		33
avr 2.9
(-2.7) 		2.4
(-2.8) 		1.4
(-3) 		3.9
(-2.5) 		18.6
(0.2) 		33.3
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7760
Sequence Type Exemplar sequence
Representative Public ID F37A8.1 NCBI
Target Description F37A8.1 /REP_DB=WormBase Gene ID /WP=CE00986 /TR=Q20111 /GB=CAA84662.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065392 NCBI Caenorhabditis elegans F37A8.1 (F37A8.1) mRNA, complete cds. 11/11 None
SNAP00000009907 ENSEMBL cdna:SNAP chromosome:CEL140:III:3928432:3929103:1 11/11 None
GENEFINDER00000009913 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3928432:3929103:1 11/11 None
F37A8.1 ENSEMBL cdna:known chromosome:CEL140:III:3928432:3929103:1 gene:F37A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3928431-3929103(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A8.1
Entrez Gene 175510 Entrez gene
SwissProt Q20111 EMBL-EBI
WormBase CE00986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84662 Hypothetical protein F37A8.1 [Caenorhabditis elegans] ref|NP_497793.1| F37A8.1 [Caenorhabditis elegans] 1.0E-81
blast AAA91217 Spt transcription factor family protein 2 [Caenorhabditis elegans] ref|NP_498032.1| F26F4.2 [Caenorhabditis elegans] 2.0E-58
blast CAE71297 Hypothetical protein CBG18186 [Caenorhabditis briggsae] 7.0E-42
Sequence
Target Sequence 
>C. ELEGANS:177964_AT
tgctatttgaatggtctctctcttcacacaatcaatgaagtcgagaagattttgcttgct
ttgccaaagaaaggcgatcgctgtgaagttcaaatgtccaaaccgttgaatagatgtatc
gggcgtagtactggtgacgtcattgcttctaggagcgtgcagatccgtgatgagccaaaa
ccattgtctctgtcgccgcagaaatctgagcaggaaatcaagaagtcgtcgaagagcaag
aaactttccgaagactgttgtttgagatcgattaaggaaagagtggagattgtggaaact
cgcaacggttcggatgcttttggcgcaaagaaacttcaatacaaggtgttgactgatcag
gttcgtgtctcgccaatcgtttcatgcaacggagtgactttggagttggatgtcgaggtg
acaattccggatcgtgatgagaagaagaaattgaagttggagatcgatcgcaccttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTATTTGAATGGTCTCTCTCTTC 318 579 37 Antisense
GTATCGGGCGTAGTACTGGTGACGT 470 451 152 Antisense
CTGGTGACGTCATTGCTTCTAGGAG 268 241 167 Antisense
GGAGCGTGCAGATCCGTGATGAGCC 219 521 188 Antisense
GAGCCAAAACCATTGTCTCTGTCGC 415 385 208 Antisense
GTCTCTGTCGCCGCAGAAATCTGAG 685 469 222 Antisense
GAAACTCGCAACGGTTCGGATGCTT 625 357 331 Antisense
TGTTGACTGATCAGGTTCGTGTCTC 575 563 383 Antisense
TGTCTCGCCAATCGTTTCATGCAAC 454 557 402 Antisense
GAGGTGACAATTCCGGATCGTGATG 218 379 451 Antisense
AAGTTGGAGATCGATCGCACCTTGT 670 155 490 Antisense
Sequence Source Affymetrix Proprietary Database