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[177963_at]

Description T22C1.4 /REP_DB=WormBase Gene ID /WP=CE06492 /TR=Q22664 /GB=CAA99922.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      4grp_high_8_8 > 56      6grp_total > 78      4grp_total > 40      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 88
(2)
P 		90.7
(3)
P 		73.8
(-3)
P 		75.5
(-2.4)
A 		17
B 109.9
(1.6)
P 		101.2
(0.9)
P 		128.4
(3)
P 		50.5
(-3)
P 		78
C 28.7
(-3)
A 		84.1
(-0)
P 		89.2
(0.3)
P 		140
(3)
P 		111
avr 75.5
(-3) 		92
(1.6) 		97.1
(3) 		88.7
(0.7) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 113.6
(-1.8)
P 		106.3
(-2.3)
P 		94.3
(-3)
P 		99
(-2.7)
A 		185.4
(2.7)
P 		190.6
(3)
P 		96
B 134
(-0.8)
P 		118.9
(-1.2)
P 		123.2
(-1.1)
P 		53.8
(-3)
M 		129.2
(-0.9)
P 		269.7
(3)
P 		216
C 134.2
(-1.3)
P 		95.3
(-2.7)
P 		106.9
(-2.3)
P 		87.8
(-3)
P 		117.3
(-1.9)
P 		251
(3)
P 		163
avr 127.3
(-1.2) 		106.8
(-2) 		108.1
(-1.9) 		80.2
(-3) 		144
(-0.6) 		237.1
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 32.1
(3)
P 		19.7
(-0.5)
P 		19.3
(-0.7)
P 		11.1
(-3)
A 		21
B 35
(3)
P 		25
(0.5)
P 		29.8
(1.7)
P 		10.8
(-3)
P 		24
C 9.5
(-3)
A 		24.2
(1.1)
P 		31.1
(3)
P 		23.6
(0.9)
P 		22
avr 25.5
(2.4) 		23
(1.1) 		26.7
(3) 		15.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 20.9
(-2.9)
P 		37.8
(-0.1)
P 		20.5
(-3)
P 		25.1
(-2.2)
A 		56
(3)
P 		46.4
(1.4)
P 		36
B 46.6
(-0.8)
P 		39.6
(-1.2)
P 		29.9
(-1.9)
P 		14.3
(-3)
M 		52.5
(-0.3)
P 		100.6
(3)
P 		86
C 49.8
(-0.1)
P 		29.1
(-2)
P 		27.2
(-2.1)
P 		17.7
(-3)
P 		38
(-1.2)
P 		84
(3)
P 		66
avr 39.1
(-0.9) 		35.5
(-1.3) 		25.9
(-2.3) 		19
(-3) 		48.8
(0.1) 		77
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.518
Sequence Type Exemplar sequence
Representative Public ID T22C1.4 NCBI
Target Description T22C1.4 /REP_DB=WormBase Gene ID /WP=CE06492 /TR=Q22664 /GB=CAA99922.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059789 NCBI Caenorhabditis elegans T22C1.4 (T22C1.4) mRNA, complete cds. 11/11 None
SNAP00000000048 ENSEMBL cdna:SNAP chromosome:CEL140:I:7948318:7948823:-1 11/11 None
GENEFINDER00000000068 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7948318:7948823:-1 11/11 None
T22C1.4 ENSEMBL cdna:known chromosome:CEL140:I:7948318:7948736:-1 gene:T22C1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7948248-7948667(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22C1.4
Entrez Gene 188728 Entrez gene
SwissProt Q22664 EMBL-EBI
WormBase CE06492 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99922 Hypothetical protein T22C1.4 [Caenorhabditis elegans] ref|NP_492190.1| T22C1.4 [Caenorhabditis elegans] 2.0E-49
blast XP_683213 PREDICTED: similar to putative protein of bilaterial origin (1I516) [Danio rerio] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177963_AT
atggctatcgaactacatggagcaatttctccacaggacgatgggagctttgacagtaaa
actttgggcacgatttgctggggagaccacaataacgtgtatatggtaatcggtaatcaa
acacttgaaggaaagatatcgaaaatcgaccggccactgctagttattcagaaaagcgat
aaaaaccaccaggagaatggagagaaaaacgccacagtgaatgcagtgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTATCGAACTACATGGAGCAA 318 51 13 Antisense
GAGCAATTTCTCCACAGGACGATGG 359 391 32 Antisense
AGGACGATGGGAGCTTTGACAGTAA 247 55 47 Antisense
GACAGTAAAACTTTGGGCACGATTT 237 367 64 Antisense
GGGCACGATTTGCTGGGGAGACCAC 326 493 78 Antisense
GCTGGGGAGACCACAATAACGTGTA 254 293 89 Antisense
ATGGTAATCGGTAATCAAACACTTG 599 45 115 Antisense
GATATCGAAAATCGACCGGCCACTG 142 425 147 Antisense
ACCGGCCACTGCTAGTTATTCAGAA 602 87 161 Antisense
GAAAAGCGATAAAAACCACCAGGAG 215 353 183 Antisense
AAACGCCACAGTGAATGCAGTGATC 695 125 219 Antisense
Sequence Source Affymetrix Proprietary Database