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[177962_at]

Description K04G2.4 /REP_DB=WormBase Gene ID /WP=CE06098 /TR=Q21223 /GB=CAB00041.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 19      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 48.7
(-1.4)
A 		83.7
(0.1)
A 		9.2
(-3)
A 		154.9
(3)
P 		146
B 87.3
(3)
A 		58.1
(-3)
A 		76.1
(0.7)
A 		75.6
(0.6)
P 		29
C 58.8
(-1.9)
A 		102.2
(0.8)
A 		41.5
(-3)
A 		138.5
(3)
P 		97
avr 64.9
(-1.3) 		81.3
(-0.1) 		42.3
(-3) 		123
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 162.7
(1.4)
P 		67.9
(-2.1)
A 		113.8
(-0.4)
M 		42.6
(-3)
A 		87.7
(-1.4)
P 		207.6
(3)
P 		165
B 53.5
(-3)
A 		77.7
(-1.9)
P 		80.1
(-1.8)
A 		56.3
(-2.9)
A 		95.3
(-1.1)
P 		185
(3)
P 		132
C 76.1
(-2.2)
A 		60.8
(-2.8)
A 		55.3
(-3)
A 		93.5
(-1.5)
A 		93.4
(-1.5)
P 		207.8
(3)
P 		153
avr 97.4
(-1.5) 		68.8
(-2.8) 		83.1
(-2.2) 		64.1
(-3) 		92.1
(-1.8) 		200.1
(3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17.7
(1.5)
A 		18.2
(1.7)
A 		2.4
(-3)
A 		22.7
(3)
P 		20
B 27.8
(3)
A 		14.4
(-3)
A 		17.6
(-1.6)
A 		16.1
(-2.2)
P 		13
C 19.5
(-1)
A 		29.4
(3)
A 		14.5
(-3)
A 		23.3
(0.5)
P 		15
avr 21.7
(3) 		20.7
(2.4) 		11.5
(-3) 		20.7
(2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 30
(-0.1)
P 		24.1
(-1)
A 		24.8
(-0.9)
M 		10.8
(-3)
A 		26.5
(-0.6)
P 		50.5
(3)
P 		40
B 18.6
(-2.6)
A 		25.9
(-1.8)
P 		19.5
(-2.5)
A 		14.9
(-3)
A 		38.7
(-0.4)
P 		69
(3)
P 		54
C 28.2
(-1.5)
A 		18.6
(-2.5)
A 		14.1
(-3)
A 		18.8
(-2.5)
A 		30.2
(-1.3)
P 		69.6
(3)
P 		56
avr 25.6
(-1.7) 		22.9
(-2) 		19.5
(-2.4) 		14.8
(-3) 		31.8
(-0.9) 		63
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1079
Sequence Type Exemplar sequence
Representative Public ID K04G2.4 NCBI
Target Description K04G2.4 /REP_DB=WormBase Gene ID /WP=CE06098 /TR=Q21223 /GB=CAB00041.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059811 NCBI Caenorhabditis elegans K04G2.4 (K04G2.4) mRNA, complete cds. 11/11 None
SNAP00000009072 ENSEMBL cdna:SNAP chromosome:CEL140:I:8044095:8045238:1 11/11 None
GENEFINDER00000009094 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8044095:8045238:1 11/11 None
K04G2.4 ENSEMBL cdna:known chromosome:CEL140:I:8044095:8045238:1 gene:K04G2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8044025-8045169(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G2.4
Entrez Gene 187006 Entrez gene
SwissProt Q21223 EMBL-EBI
WormBase CE06098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00041 Hypothetical protein K04G2.4 [Caenorhabditis elegans] ref|NP_492212.1| K04G2.4 [Caenorhabditis elegans] 1.0E-119
blast CAE63702 Hypothetical protein CBG08217 [Caenorhabditis briggsae] 3.0E-73
Sequence
Target Sequence 
>C. ELEGANS:177962_AT
gatactgtggagccaactcatcagaagactagtgcacacgttccagagaaaagtatcaag
aagcaagaagtcaagcaagaagtcaaaaagcatgaaacaaccacagtcgttcacacgaat
gtacatgtgccaaaacctactcataagctaccacaagcatctgaaattcctattgaaaga
atgggatcagatcctcatacagctattgcacctacttaccaacaaaaacagttcgccaca
tctacttactacccaatgcccacaattggagaaaaacaaaaatcaccagaaaaagcaaaa
ccggcaagaaaagttgataatactgatgaaaagaagagaaagaaagatcagaatgaaaag
ccagttatcaatggaccaaatgttcgtcatcaattgactccagaagatttggagtatatc
aaacgatcggttcaacaaagaaacgaacgacgtgcgtttatgatggctcatcgaaatgaa
acagacgacacgttgtatgagcttgaagtacgaatgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTGTGGAGCCAACTCATCAGA 102 425 205 Antisense
GAAGACTAGTGCACACGTTCCAGAG 1 341 228 Antisense
AAACAACCACAGTCGTTCACACGAA 547 129 299 Antisense
AAAACCTACTCATAAGCTACCACAA 543 129 336 Antisense
GCTACCACAAGCATCTGAAATTCCT 354 303 351 Antisense
GGATCAGATCCTCATACAGCTATTG 580 511 388 Antisense
TACAGCTATTGCACCTACTTACCAA 82 641 402 Antisense
AAAACAGTTCGCCACATCTACTTAC 285 131 429 Antisense
CTTACTACCCAATGCCCACAATTGG 289 221 449 Antisense
ACGACGTGCGTTTATGATGGCTCAT 118 93 651 Antisense
ATGAGCTTGAAGTACGAATGCCGGA 472 45 701 Antisense
Sequence Source Affymetrix Proprietary Database