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[177961_at]

Description F54F7.2 /REP_DB=WormBase Gene ID /WP=CE03417 /TR=Q20789 /GB=CAA91755.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 92      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 281.6
(3)
P 		159.6
(-3)
A 		227.5
(0.3)
A 		206.5
(-0.7)
M 		122
B 252.4
(3)
P 		238.8
(2)
A 		167.9
(-3)
A 		201.3
(-0.6)
A 		85
C 262.6
(3)
P 		246.8
(1.1)
A 		213.2
(-3)
A 		248.1
(1.2)
P 		49
avr 265.5
(3) 		215.1
(-1.8) 		202.9
(-3) 		218.6
(-1.5) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 292.6
(3)
P 		209.5
(-0.9)
P 		250.2
(1)
P 		182.4
(-2.1)
A 		233.1
(0.2)
P 		164.1
(-3)
A 		129
B 226.4
(-1.3)
P 		243.1
(-0.7)
P 		222.3
(-1.5)
M 		232.6
(-1.1)
P 		330.5
(3)
P 		186.9
(-3)
P 		144
C 153.2
(-1.9)
A 		240.5
(3)
P 		162.9
(-1.4)
A 		134.1
(-3)
A 		218.7
(1.8)
P 		210.7
(1.3)
P 		106
avr 224.1
(0.2) 		231
(0.7) 		211.8
(-0.8) 		183
(-3) 		260.8
(3) 		187.2
(-2.7) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 102.5
(3)
P 		34.6
(-2.6)
A 		59.5
(-0.6)
A 		30.2
(-3)
M 		72
B 80.5
(3)
P 		59
(-0.1)
A 		38.9
(-3)
A 		42.9
(-2.4)
A 		42
C 86.9
(3)
P 		71
(0.9)
A 		74.3
(1.3)
A 		41.8
(-3)
P 		45
avr 90
(3) 		54.9
(-1.1) 		57.6
(-0.8) 		38.3
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 53.9
(-0.6)
P 		74.5
(3)
P 		54.5
(-0.5)
P 		46.3
(-1.9)
A 		70.3
(2.3)
P 		39.9
(-3)
A 		35
B 78.8
(-1.1)
P 		80.9
(-1)
P 		54
(-3)
M 		61.6
(-2.4)
P 		134.3
(3)
P 		69.7
(-1.8)
P 		80
C 56.8
(0.9)
A 		73.4
(3)
P 		41.4
(-1.1)
A 		27
(-3)
A 		70.8
(2.7)
P 		70.5
(2.6)
P 		46
avr 63.2
(-0.7) 		76.3
(1) 		50
(-2.4) 		45
(-3) 		91.8
(3) 		60
(-1.1) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17185
Sequence Type Exemplar sequence
Representative Public ID F54F7.2 NCBI
Target Description F54F7.2 /REP_DB=WormBase Gene ID /WP=CE03417 /TR=Q20789 /GB=CAA91755.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077576 NCBI Caenorhabditis elegans F54F7.2 (F54F7.2) mRNA, complete cds. 11/11 None
SNAP00000009557 ENSEMBL cdna:SNAP chromosome:CEL140:X:11843586:11845030:1 11/11 None
GENEFINDER00000009566 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11843586:11845030:1 11/11 None
F54F7.2 ENSEMBL cdna:known chromosome:CEL140:X:11843586:11845030:1 gene:F54F7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11842783-11845030(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54F7.2
Entrez Gene 186253 Entrez gene
SwissProt Q20789 EMBL-EBI
WormBase CE37524 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91755 Hypothetical protein F54F7.2 [Caenorhabditis elegans] ref|NP_509977.2| F54F7.2 [Caenorhabditis elegans] 1.0E-176
blast CAE69419 Hypothetical protein CBG15583 [Caenorhabditis briggsae] 7.0E-70
Sequence
Target Sequence 
>C. ELEGANS:177961_AT
ggaactatcatcttctcaatatcgaatcaacaaccggaaaacattcaagacaagaaatcg
aatccagcagaaggaagtattccatttgcgacatctggagatagcgttccagtgaatgtt
tcatcggacattgggttggttatcgaagcagcttttatgaatccgagtgtccgagtcgaa
attgaagtggagtactcaacaccgtacaccatggtcattggaaagtgtggactgaccatg
ttgagacttgaaggaaatggagaactgaaaaagcataactttggttgggatgagacaaaa
ctcttacgtcttgtgaaagctactcaatgccccggagacaacagtgacaccatcgactat
gtgatgtcatcggagaaagcaggtagtggtactcttaagttctcgatgatgcgacaccag
tccaaaatggatcgtcacccagcaaacatgtttgatacaatggagctcgcccgtggagtt
ccaaagcatcatccgtccgatgagaagaccccaactcagtcttcaaatgtcgttcgcact
ttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTATCATCTTCTCAATATCGA 215 529 595 Antisense
GGAAGTATTCCATTTGCGACATCTG 261 531 667 Antisense
TACTCAACACCGTACACCATGGTCA 343 643 787 Antisense
TGCCCCGGAGACAACAGTGACACCA 433 585 922 Antisense
GTTCTCGATGATGCGACACCAGTCC 286 443 993 Antisense
AATGGATCGTCACCCAGCAAACATG 132 163 1020 Antisense
GTTTGATACAATGGAGCTCGCCCGT 473 451 1044 Antisense
TGGAGTTCCAAAGCATCATCCGTCC 521 549 1068 Antisense
ATCCGTCCGATGAGAAGACCCCAAC 178 3 1085 Antisense
GACCCCAACTCAGTCTTCAAATGTC 643 381 1101 Antisense
TTCAAATGTCGTTCGCACTTTCTTT 624 685 1116 Antisense
Sequence Source Affymetrix Proprietary Database