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[177960_at]

Description C47F8.4 /REP_DB=WormBase Gene ID /WP=CE17573 /TR=O62113 /GB=CAA15837.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 5.6
(-3)
A 		8.3
(-2.8)
A 		7.6
(-2.9)
A 		105.8
(3)
A 		100
B 6.9
(-3)
A 		21
(3)
A 		10.2
(-1.6)
A 		10.8
(-1.3)
A 		14
C 6.8
(-2.9)
A 		11.3
(-2.6)
A 		5.5
(-3)
A 		103.4
(3)
A 		98
avr 6.4
(-3) 		13.5
(-2.4) 		7.8
(-2.9) 		73.3
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.4
(1.5)
A 		3.9
(-3)
A 		6.8
(0.7)
A 		7.7
(1.9)
A 		8.6
(3)
A 		5.3
(-1.2)
A 		5
B 4
(-1.7)
A 		3.7
(-2.1)
A 		3.3
(-2.6)
A 		3
(-3)
A 		7.5
(3)
A 		5.9
(0.9)
A 		5
C 3.2
(-2.5)
A 		2.8
(-2.7)
A 		10.5
(2.5)
A 		11.2
(3)
A 		5.6
(-0.8)
A 		2.4
(-3)
A 		9
avr 4.9
(-0.8) 		3.5
(-3) 		6.9
(2.4) 		7.3
(3) 		7.2
(2.8) 		4.5
(-1.4) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2
(-2.9)
A 		1.8
(-3)
A 		2
(-2.9)
A 		15.5
(3)
A 		14
B 2.2
(-3)
A 		5.2
(3)
A 		2.4
(-2.6)
A 		2.3
(-2.8)
A 		3
C 2.3
(-2.8)
A 		3.2
(-2.5)
A 		1.9
(-3)
A 		17.4
(3)
A 		16
avr 2.2
(-2.9) 		3.4
(-2.2) 		2.1
(-3) 		11.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		1.4
(-2.5)
A 		1.5
(-2.1)
A 		2
(0.2)
A 		2.6
(3)
A 		1.3
(-3)
A 		1
B 1.4
(-1.4)
A 		1.2
(-1.9)
A 		0.8
(-3)
A 		0.8
(-3)
A 		3
(3)
A 		2.2
(0.8)
A 		2
C 1.2
(-1.7)
A 		0.8
(-3)
A 		2.7
(3)
A 		2.2
(1.4)
A 		1.8
(0.2)
A 		0.8
(-3)
A 		2
avr 1.3
(-2.1) 		1.1
(-3) 		1.7
(-0.4) 		1.7
(-0.4) 		2.5
(3) 		1.4
(-1.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.538
Sequence Type Exemplar sequence
Representative Public ID C47F8.4 NCBI
Target Description C47F8.4 /REP_DB=WormBase Gene ID /WP=CE17573 /TR=O62113 /GB=CAA15837.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060713(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060713 NCBI Caenorhabditis elegans C47F8.4 (C47F8.4) mRNA, complete cds. 11/11 None
SNAP00000020209 ENSEMBL cdna:SNAP chromosome:CEL140:I:12325443:12326857:-1 11/11 None
GENEFINDER00000020221 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12325443:12326857:-1 11/11 None
C47F8.4 ENSEMBL cdna:known chromosome:CEL140:I:12325443:12326650:-1 gene:C47F8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12325373-12326581(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47F8.4
Entrez Gene 183560 Entrez gene
SwissProt O62113 EMBL-EBI
WormBase CE17573 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15837 Hypothetical protein C47F8.4 [Caenorhabditis elegans] ref|NP_493114.1| C47F8.4 [Caenorhabditis elegans] 1.0E-133
blast CAA15837 Hypothetical protein C47F8.4 [Caenorhabditis elegans] ref|NP_493114.1| C47F8.4 [Caenorhabditis elegans] 1.0E-132
blast CAB05467 Hypothetical protein C54C8.5 [Caenorhabditis elegans] ref|NP_493160.1| C54C8.5 [Caenorhabditis elegans] 1.0E-116
blast CAB05467 Hypothetical protein C54C8.5 [Caenorhabditis elegans] ref|NP_493160.1| C54C8.5 [Caenorhabditis elegans] 1.0E-114
blast CAI99629 beta-1,3-glucuronosyltransferase [Caenorhabditis briggsae] 6.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 1.0E-126
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000020209 1 13-32
GENEFINDER00000020221 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:177960_AT
ggtatcgtcccagaagttcgacagatgctcgagagaactaacttatcgtatacctacatg
gctcacaagactgcaaaagggtacccatcgcgtggttggtatcagcgaacgatggcgttg
agatacattcgatcgtcgtcggcgaagatcctgggaaagcagagaaacggcgcagttgtg
tactttgcagacgatgataatgcgtatgatgtgaggttattcactgattatataaggaat
gtgaatactttgggagtttgggctgttggcctagtcggaggagtcgttgtggaagctcca
aaagtcgtcaaccaaaaagtgaccgccttcaacgttagatgggctctcagccgacgattc
gccgtagacatggcaggctttgcaatcaacctgaaactaatcctaaactccgacgcagta
ttcggaacagactgcaaacgaggagagggcgctccggagacatgtctgctggaggatatg
gggttgaaaatggaagatattgagccatttggctatgatgcaacgaaggtccgagatatc
atggtatggcacaccaaaactagtcccccagagattgagcaaaccgaccagccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTATCGTCCCAGAAGTTCGACAGA 5 495 133 Antisense
GGTACCCATCGCGTGGTTGGTATCA 146 505 212 Antisense
CGATCGTCGTCGGCGAAGATCCTGG 486 249 262 Antisense
GAGAAACGGCGCAGTTGTGTACTTT 429 391 294 Antisense
GGCTGTTGGCCTAGTCGGAGGAGTC 683 539 393 Antisense
AAAGTGACCGCCTTCAACGTTAGAT 519 121 448 Antisense
TTAGATGGGCTCTCAGCCGACGATT 614 681 467 Antisense
GCCGACGATTCGCCGTAGACATGGC 382 283 482 Antisense
CGCTCCGGAGACATGTCTGCTGGAG 431 255 582 Antisense
AAACTAGTCCCCCAGAGATTGAGCA 56 129 689 Antisense
GATTGAGCAAACCGACCAGCCAATT 243 435 705 Antisense
Sequence Source Affymetrix Proprietary Database