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[177959_at]

Description C36B1.6 /REP_DB=WormBase Gene ID /WP=CE05373 /TR=Q93340 /GB=CAB02271.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      6grp_total > 61      4grp_total > 47      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 177.3
(2.2)
P 		123.1
(-2.3)
M 		114.9
(-3)
A 		186.5
(3)
M 		72
B 175
(3)
P 		130.9
(-1.6)
A 		117.9
(-3)
A 		132.4
(-1.5)
P 		57
C 204
(3)
P 		163.1
(0.5)
A 		175.3
(1.3)
P 		105
(-3)
P 		99
avr 185.4
(3) 		139
(-2.6) 		136
(-3) 		141.3
(-2.4) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 210.3
(0.5)
M 		86.4
(-3)
A 		296.6
(3)
P 		175.2
(-0.5)
P 		198.9
(0.2)
P 		163.3
(-0.8)
P 		210
B 171.7
(0.2)
P 		124.1
(-3)
P 		214.4
(3)
P 		208
(2.6)
P 		186
(1.1)
P 		171.7
(0.2)
P 		90
C 207.4
(1.4)
P 		128
(-3)
P 		183.6
(0.1)
P 		237.1
(3)
P 		155.7
(-1.5)
P 		144.8
(-2.1)
P 		109
avr 196.5
(1.2) 		112.8
(-3) 		231.5
(3) 		206.8
(1.8) 		180.2
(0.4) 		159.9
(-0.6) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 64.6
(3)
P 		26.7
(-3)
M 		30
(-2.5)
A 		27.3
(-2.9)
M 		38
B 55.8
(3)
P 		32.3
(-1.9)
A 		27.3
(-3)
A 		28.2
(-2.8)
P 		29
C 67.5
(3)
P 		46.9
(0.5)
A 		61.1
(2.2)
P 		17.7
(-3)
P 		50
avr 62.6
(3) 		35.3
(-1.3) 		39.5
(-0.6) 		24.4
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 38.8
(-1.6)
M 		30.7
(-3)
A 		64.6
(3)
P 		44.4
(-0.6)
P 		60
(2.2)
P 		39.7
(-1.4)
P 		34
B 59.7
(0.2)
P 		41.3
(-3)
P 		52.1
(-1.1)
P 		55.1
(-0.6)
P 		75.6
(3)
P 		64
(1)
P 		34
C 76.9
(3)
P 		39
(-3)
P 		46.7
(-1.8)
P 		47.7
(-1.6)
P 		50.4
(-1.2)
P 		48.5
(-1.5)
P 		38
avr 58.5
(2.2) 		37
(-3) 		54.5
(1.2) 		49.1
(-0.1) 		62
(3) 		50.7
(0.3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1829
Sequence Type Exemplar sequence
Representative Public ID C36B1.6 NCBI
Target Description C36B1.6 /REP_DB=WormBase Gene ID /WP=CE05373 /TR=Q93340 /GB=CAB02271.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059961
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059961 NCBI Caenorhabditis elegans C36B1.6 (C36B1.6) mRNA, complete cds. None
C36B1.6 ENSEMBL cdna:known chromosome:CEL140:I:8740462:8741508:1 gene:C36B1.6 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8740223-8740738(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36B1.6
Entrez Gene 183251 Entrez gene
SwissProt Q93340 EMBL-EBI
WormBase CE37752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02271 Hypothetical protein C36B1.6 [Caenorhabditis elegans] ref|NP_492362.2| C36B1.6 [Caenorhabditis elegans] 2.0E-83
blast CAI70398 Hypothetical protein C36B1.13 [Caenorhabditis elegans] ref|NP_001021026.1| C36B1.13 [Caenorhabditis elegans] 8.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492362.2 4 5-27,42-64,85-107,122-144
C36B1.6 4 5-27,42-64,85-107,122-144
Sequence
Target Sequence 
>C. ELEGANS:177959_AT
agaatgtgtcatcgttctcttttcagtcaccttatcagttattctacacaacttcaaaat
gaaattcaatttttcctttgataaaataacttgtgatactcatttccgattgcatctgtc
agttaaaaaaactcaatatttggaatactttccaaacaatgggaacatgtataactgttt
gttgtattgcaccatgtgtcttgatattttctctagcaattcctgcatttctgatgtatt
taattcaaatattcctatttggatgatatgtattgcaagtctcatggtaattcaagtaat
tatggaatcatttccatgtgtcaaagatcgttcagtcaagaaaatggagtgttcgattga
ttgttgctcgatttttagtgtgttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATGTGTCATCGTTCTCTTTTCA 546 75 24 Antisense
TCTCTTTTCAGTCACCTTATCAGTT 683 611 39 Antisense
GTCACCTTATCAGTTATTCTACACA 140 467 49 Antisense
TACTCATTTCCGATTGCATCTGTCA 133 647 120 Antisense
AACTGTTTGTTGTATTGCACCATGT 407 143 196 Antisense
GCACCATGTGTCTTGATATTTTCTC 403 315 212 Antisense
GATATTTTCTCTAGCAATTCCTGCA 393 427 226 Antisense
AATTCCTGCATTTCTGATGTATTTA 706 177 241 Antisense
GAATCATTTCCATGTGTCAAAGATC 31 329 328 Antisense
GGAGTGTTCGATTGATTGTTGCTCG 288 517 369 Antisense
GTTGCTCGATTTTTAGTGTGTTGTT 356 439 386 Antisense
Sequence Source Affymetrix Proprietary Database