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[177958_at]

Description F36D1.7 /REP_DB=WormBase Gene ID /WP=CE18668 /TR=Q9XV43 /GB=CAB04304.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 54      4grp_high_8_8 > 58      6grp_highest_nonorm > 81      6grp_total > 55      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 375.3
(3)
P 		238.7
(0.7)
P 		284.2
(1.5)
P 		16.9
(-3)
A 		358
B 312
(1.7)
P 		281.4
(1.1)
P 		379.7
(3)
P 		64.3
(-3)
P 		315
C 324.8
(3)
P 		210.3
(0.2)
P 		284.2
(2)
P 		75.3
(-3)
P 		250
avr 337.4
(3) 		243.5
(1) 		316
(2.5) 		52.2
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 193.4
(-2.7)
P 		292.3
(0.9)
P 		351
(3)
P 		246.5
(-0.8)
P 		184
(-3)
P 		304.8
(1.3)
P 		167
B 234.2
(-1.6)
P 		272.4
(-0.5)
P 		396.6
(3)
P 		269.9
(-0.6)
P 		185.6
(-3)
P 		339
(1.4)
P 		211
C 276.8
(-1.2)
P 		341
(1.6)
P 		295.5
(-0.4)
P 		234.9
(-3)
P 		274.9
(-1.3)
P 		373.5
(3)
P 		139
avr 234.8
(-2.1) 		301.9
(0.9) 		347.7
(3) 		250.4
(-1.4) 		214.8
(-3) 		339.1
(2.6) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 136.6
(3)
P 		51.8
(-0.8)
P 		74.3
(0.2)
P 		2.5
(-3)
A 		134
B 99.5
(3)
P 		69.5
(0.9)
P 		88
(2.2)
P 		13.7
(-3)
P 		86
C 107.5
(3)
P 		60.5
(0)
P 		99.1
(2.5)
P 		12.7
(-3)
P 		95
avr 114.5
(3) 		60.6
(-0.1) 		87.1
(1.4) 		9.6
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 35.6
(-3)
P 		104
(3)
P 		76.4
(0.6)
P 		62.5
(-0.6)
P 		55.5
(-1.3)
P 		74.2
(0.4)
P 		68
B 81.5
(-1.9)
P 		90.7
(-0.9)
P 		96.3
(-0.3)
P 		71.5
(-3)
P 		75.4
(-2.6)
P 		126.4
(3)
P 		55
C 102.6
(1.3)
P 		104.1
(1.4)
P 		75.2
(-0.8)
P 		47.2
(-3)
P 		89
(0.2)
P 		125
(3)
P 		78
avr 73.2
(-1.4) 		99.6
(1.9) 		82.6
(-0.2) 		60.4
(-3) 		73.3
(-1.4) 		108.5
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1433
Sequence Type Exemplar sequence
Representative Public ID F36D1.7 NCBI
Target Description F36D1.7 /REP_DB=WormBase Gene ID /WP=CE18668 /TR=Q9XV43 /GB=CAB04304.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060491 NCBI Caenorhabditis elegans F36D1.7 (F36D1.7) mRNA, complete cds. 11/11 None
SNAP00000013618 ENSEMBL cdna:SNAP chromosome:CEL140:I:11271303:11272795:1 11/11 None
GENEFINDER00000013636 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11271303:11271740:1 11/11 None
F36D1.7 ENSEMBL cdna:known chromosome:CEL140:I:11271303:11271740:1 gene:F36D1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11271233-11271671(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D1.7
Entrez Gene 185349 Entrez gene
SwissProt Q9XV43 EMBL-EBI
WormBase CE18668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04304 Hypothetical protein F36D1.7 [Caenorhabditis elegans] ref|NP_492892.1| F36D1.7 [Caenorhabditis elegans] 3.0E-54
blast CAB04304 Hypothetical protein F36D1.7 [Caenorhabditis elegans] ref|NP_492892.1| F36D1.7 [Caenorhabditis elegans] 4.0E-41
Sequence
Target Sequence 
>C. ELEGANS:177958_AT
tctccaatattttctagttttcgcgttgatttttgcaattttcgactcaatttctgctca
gccagtacctgtgaactctgtggaatccgctgaaaatgacttgaattctgtggaaactgc
ggggcaggtggatgcaaattccgcagaatctgctgaaactactggaagctcaagaaatct
agctgttaacgctccagattctgtggaatcagctgaaactctcggaaatccggggaaatc
cggaaattctggatcgcctaaagcttcagcaagccttatttctgctgatgccccaaattc
tgtggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCAATATTTTCTAGTTTTCGCG 361 599 21 Antisense
AGTTTTCGCGTTGATTTTTGCAATT 409 61 36 Antisense
GCAATTTTCGACTCAATTTCTGCTC 474 323 55 Antisense
TCAATTTCTGCTCAGCCAGTACCTG 1 633 67 Antisense
ACCTGTGAACTCTGTGGAATCCGCT 444 87 87 Antisense
GGGGCAGGTGGATGCAAATTCCGCA 150 499 141 Antisense
AGCTGTTAACGCTCCAGATTCTGTG 138 81 201 Antisense
AAATCCGGAAATTCTGGATCGCCTA 115 117 256 Antisense
GGATCGCCTAAAGCTTCAGCAAGCC 143 513 271 Antisense
GCAAGCCTTATTTCTGCTGATGCCC 645 319 289 Antisense
GCTGATGCCCCAAATTCTGTGGAAA 582 295 304 Antisense
Sequence Source Affymetrix Proprietary Database